| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0040 |
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| Symbol | ribB |
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| ID | 4920431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 46327 |
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| End bp | 46980 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161552 |
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| Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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| Protein accession | YP_001092172 |
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| Protein GI | 127510975 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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| TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAATCAGT CTCTACTTTC TCCCTTTGGC GATGCCATCA CTCGCGTCGA AGCAGCTCTC
ACGGCGCTTA GAGCCGGTCA AGGCGTGCTG GTGGTCGACG ATGAAGATCG CGAAAACGAA
GGGGACCTTA TCTATAGCGC AGAACACCTG ACCCAAGAAC AGATGGCACT GCTGATCCGT
GAATGTAGCG GTATCGTCTG TCTCTGTCTC ACCGACGAGC GGGTGAAGCA GCTGGAGCTA
CCGCCCATGG TGGAAGACAA CTCCAGCCAA TACGGCACCG CCTTTACCGT GAGTATCGAA
GCCAAGGTGG GGGTGACCAC AGGTGTGTCG GCGGCCGATC GCGTAACCAC TATCAAGGCC
GCCATCGCCG ATGATGCCAA GCCTAGCGAC CTGGCCCGTC CCGGCCATGT CTATCCGCTA
CGGGCGCAGC CCGGTGGCGT GCTAACACGT CGGGGCCATA CCGAGGGCAC CATAGATCTG
ATGAAGCTGG CGGGACTCAA GCCGGCCGGC GTGCTGTGTG AAGTGACTAA TGTCAACGGC
ACAATGGCGC GTCTGCCAGA GATCATCGCC TTCGGCGAGC AGCATAAGAT GCCTGTGCTG
ACCATCGAAG ATATCGTCTG CTATCGCAAG TCATTGCTGG AAAAGGCGAG CTAA
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| Protein sequence | MNQSLLSPFG DAITRVEAAL TALRAGQGVL VVDDEDRENE GDLIYSAEHL TQEQMALLIR
ECSGIVCLCL TDERVKQLEL PPMVEDNSSQ YGTAFTVSIE AKVGVTTGVS AADRVTTIKA
AIADDAKPSD LARPGHVYPL RAQPGGVLTR RGHTEGTIDL MKLAGLKPAG VLCEVTNVNG
TMARLPEIIA FGEQHKMPVL TIEDIVCYRK SLLEKAS
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