Gene Shew_0031 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShew_0031 
Symbol 
ID4920504 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella loihica PV-4 
KingdomBacteria 
Replicon accessionNC_009092 
Strand
Start bp33256 
End bp34416 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content56% 
IMG OID640161543 
ProductRND family efflux transporter MFP subunit 
Protein accessionYP_001092163 
Protein GI127510966 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value3.18769e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGCAAA TAGTAAAAAT TGCCTCGTTA GTTAGTGTGG CGTTATGGAT AACAGGTTGT 
GGCCAGGACG AGAACCAAGG TCATTCGGCA GCAGCCCCAA GAAGCATGGA GGTTGGGGTG
GTTCAGGTTG TCGAGCAGCC CCAGGCTATT CAGGTTGAGC TACCGGGTCG CAGCAAGGCA
TATCTTGAGG CCGAGGTGCG TCCTCAGGTG TCGGGTATCA TCACTGAGCG CGGCTTCGTC
GAGGGTGGTG AGGTAACCGA AGGCCAATCT CTCTATCAGA TCGATTCGTC GACCTATAAG
GCGGCGCTGG TCAGTGCCGA AGCCGATCTG GCCCGTGCCA ATGCCAGCCT GGTGTCTGCC
AAGGCCAAGG CTGCCAGATA TAAGGCCTTG ATCAAGACTG ATGCCATCAG CCAACAAGAT
TTCGACGAGG CTGATGCCCT CTACAAAGAG GCGCTGGCTA ACGTGACTGT GGCCAAGGCG
GCGATTAACA CGGCTAAGAT CAACCTGGAA TACACTCAGG TGAAGGCACC TATCTCGGGC
CGTATCGGTA AGTCTTCCGT GACTGCCGGT GCCCTGGTGA CCGCGAATCA GAGCGCCGCA
CTGGCGACGA TTCAACAGCT GGATCCTATC AACGTCGATA TCGCTCAATC TAGCGCTCAG
CTGCTACGCC TCAAGGCCAA GCTTAAGCAG GGACAACTGC AGGCGGCTGA CAATGCCGAT
GTACGTCTGA TCCTGGAAGA TGGCACGGCA TACGAGCACA TGGGGTCGCT CAGATTCGCC
GAGGTGAGTG TCGATGAGAA CACGGGTTCA GTAACCCTAA GGGCCGAATT CCCTAACCCG
GATGGCGTAT TGCTTCCTGG CATGTATGTG CGCGCCGTAT TGAACGCGGG TACAGATCCT
AAGGCGATTC TGGTACCGCA GAAGGCGGTA ACCCGTAATA CCAAGGGTCA GGCCGTTGCC
ATGGTGATTG GCGCCGAGAG CAAGGTCGAG CCAAGAGTAG TGACGACTGC CGAGGTGATC
GATCATCAGT GGCGCATCAC CAGCGGCTTG AAGGCTGGCG ATCAGCTGAT TGTCGAGGGA
TTACAGAAGA TACGTCCGGG CGCCCCTGTG GTGGGTAAAC CACTCAGCGA GATGCAATCA
GACAAGCAAC CACAGAAGTA A
 
Protein sequence
MRQIVKIASL VSVALWITGC GQDENQGHSA AAPRSMEVGV VQVVEQPQAI QVELPGRSKA 
YLEAEVRPQV SGIITERGFV EGGEVTEGQS LYQIDSSTYK AALVSAEADL ARANASLVSA
KAKAARYKAL IKTDAISQQD FDEADALYKE ALANVTVAKA AINTAKINLE YTQVKAPISG
RIGKSSVTAG ALVTANQSAA LATIQQLDPI NVDIAQSSAQ LLRLKAKLKQ GQLQAADNAD
VRLILEDGTA YEHMGSLRFA EVSVDENTGS VTLRAEFPNP DGVLLPGMYV RAVLNAGTDP
KAILVPQKAV TRNTKGQAVA MVIGAESKVE PRVVTTAEVI DHQWRITSGL KAGDQLIVEG
LQKIRPGAPV VGKPLSEMQS DKQPQK