| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0031 |
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| Symbol | |
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| ID | 4920504 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 33256 |
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| End bp | 34416 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161543 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001092163 |
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| Protein GI | 127510966 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000318769 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGGCAAA TAGTAAAAAT TGCCTCGTTA GTTAGTGTGG CGTTATGGAT AACAGGTTGT
GGCCAGGACG AGAACCAAGG TCATTCGGCA GCAGCCCCAA GAAGCATGGA GGTTGGGGTG
GTTCAGGTTG TCGAGCAGCC CCAGGCTATT CAGGTTGAGC TACCGGGTCG CAGCAAGGCA
TATCTTGAGG CCGAGGTGCG TCCTCAGGTG TCGGGTATCA TCACTGAGCG CGGCTTCGTC
GAGGGTGGTG AGGTAACCGA AGGCCAATCT CTCTATCAGA TCGATTCGTC GACCTATAAG
GCGGCGCTGG TCAGTGCCGA AGCCGATCTG GCCCGTGCCA ATGCCAGCCT GGTGTCTGCC
AAGGCCAAGG CTGCCAGATA TAAGGCCTTG ATCAAGACTG ATGCCATCAG CCAACAAGAT
TTCGACGAGG CTGATGCCCT CTACAAAGAG GCGCTGGCTA ACGTGACTGT GGCCAAGGCG
GCGATTAACA CGGCTAAGAT CAACCTGGAA TACACTCAGG TGAAGGCACC TATCTCGGGC
CGTATCGGTA AGTCTTCCGT GACTGCCGGT GCCCTGGTGA CCGCGAATCA GAGCGCCGCA
CTGGCGACGA TTCAACAGCT GGATCCTATC AACGTCGATA TCGCTCAATC TAGCGCTCAG
CTGCTACGCC TCAAGGCCAA GCTTAAGCAG GGACAACTGC AGGCGGCTGA CAATGCCGAT
GTACGTCTGA TCCTGGAAGA TGGCACGGCA TACGAGCACA TGGGGTCGCT CAGATTCGCC
GAGGTGAGTG TCGATGAGAA CACGGGTTCA GTAACCCTAA GGGCCGAATT CCCTAACCCG
GATGGCGTAT TGCTTCCTGG CATGTATGTG CGCGCCGTAT TGAACGCGGG TACAGATCCT
AAGGCGATTC TGGTACCGCA GAAGGCGGTA ACCCGTAATA CCAAGGGTCA GGCCGTTGCC
ATGGTGATTG GCGCCGAGAG CAAGGTCGAG CCAAGAGTAG TGACGACTGC CGAGGTGATC
GATCATCAGT GGCGCATCAC CAGCGGCTTG AAGGCTGGCG ATCAGCTGAT TGTCGAGGGA
TTACAGAAGA TACGTCCGGG CGCCCCTGTG GTGGGTAAAC CACTCAGCGA GATGCAATCA
GACAAGCAAC CACAGAAGTA A
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| Protein sequence | MRQIVKIASL VSVALWITGC GQDENQGHSA AAPRSMEVGV VQVVEQPQAI QVELPGRSKA
YLEAEVRPQV SGIITERGFV EGGEVTEGQS LYQIDSSTYK AALVSAEADL ARANASLVSA
KAKAARYKAL IKTDAISQQD FDEADALYKE ALANVTVAKA AINTAKINLE YTQVKAPISG
RIGKSSVTAG ALVTANQSAA LATIQQLDPI NVDIAQSSAQ LLRLKAKLKQ GQLQAADNAD
VRLILEDGTA YEHMGSLRFA EVSVDENTGS VTLRAEFPNP DGVLLPGMYV RAVLNAGTDP
KAILVPQKAV TRNTKGQAVA MVIGAESKVE PRVVTTAEVI DHQWRITSGL KAGDQLIVEG
LQKIRPGAPV VGKPLSEMQS DKQPQK
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