| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0026 |
|---|
| Symbol | |
|---|
| ID | 4923295 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella loihica PV-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009092 |
|---|
| Strand | + |
|---|
| Start bp | 28832 |
|---|
| End bp | 29368 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640161538 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001092158 |
|---|
| Protein GI | 127510961 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00253798 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTCT ATTTTCGTTT GTTTTGGTTG ATGTTTTGGC GGGTACGTCA TTGTCGTCGT
ATCGATTTTC TGGGCACGAG TACCATTAGC TATCGCGCCT TGCCGCTGGA TTGCGACATT
AACCTGCACC TGACTAACTC CCGCTATCCC GCCCTGATGG ATCTGGCCCG TACCTACATG
TTGGCCGAGA TGGGGCTGCT GAAACGCTTC TTGAAACTCA AGTGGTTGCC GATCGTCAAC
GCCGCCGAGT TCACCTATAT TCGCGACATC AAACCCCTGT GTAAATTCGA CATTCAGAGT
CGAGTGGTGG GTTGGGACGA GAAATACTTC TATGTCGAGC AGCGCTTCGT CAGCGGCGAC
ACCCTTCACT GTATCGTGCA TGTGCGCGGC GTGTTCGTGA ACAACCGCAA GCAGGTACCG
ATTCCTGAGA TGCTCAAGGA GGCGGGCTTC GATGGCCCCG AACCTTGTTT ACCGCCGGAA
ATCGAAAAGT GGAAAGCCTT CCTGACGCTC AAGAAAGAGC GCAACCTGCC TGCTTAA
|
|---|
| Protein sequence | MNLYFRLFWL MFWRVRHCRR IDFLGTSTIS YRALPLDCDI NLHLTNSRYP ALMDLARTYM
LAEMGLLKRF LKLKWLPIVN AAEFTYIRDI KPLCKFDIQS RVVGWDEKYF YVEQRFVSGD
TLHCIVHVRG VFVNNRKQVP IPEMLKEAGF DGPEPCLPPE IEKWKAFLTL KKERNLPA
|
|---|
| |