| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0025 |
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| Symbol | |
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| ID | 4923024 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | + |
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| Start bp | 28183 |
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| End bp | 28716 |
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| Gene Length | 534 bp |
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| Protein Length | 177 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161537 |
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| Product | protoporphyrinogen oxidase |
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| Protein accession | YP_001092157 |
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| Protein GI | 127510960 |
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| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
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| COG ID | [COG4635] Flavodoxin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00109828 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTTCAG TGCTAATTGT TTACTATTCT CGCGGTGGCC ATACGGCCAA GATTGCCCAA
GCGATAGCGG CGCACTTGGA CGCTCAAGGG CATAGTTGCG ACGCCCTGCG TATTGGCGAG
TTTGAGCATA TCGATTGGGA AAAATACGAC TATGTTGCCG TGGGCGCCTG CGTACTCTAT
GGCAGCTACC ATAAGTCCGT GTTCGAATTT GTCACTCGCT ACCAGGCTGA GCTGGCGGCC
AAGCCTAACA GCTTCTTCAG CGTCAACGTG GTGGCCCGTA ACCCCGAGAA ACGGATCCCC
GAGAACAACA AGTATCTGCA GAAGTTTATC GAGCTCTCTC CCTGGAAGCC GAATGACGTT
AAGGTGATTG CCGGCAAGGT GGACTACCCC TCCTGGCGTT GGTATGACAG GTGGATGATC
CAGCTGATCA TGAAGATCAC CGATGGCCCA ACCGATCCTA AGGCGGTGAT CGATTACACC
GACTGGGAAG ACGTTAAGCT ATATGCAGAG CACCTGCTGA CCCTCAAGGA TTAG
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| Protein sequence | MASVLIVYYS RGGHTAKIAQ AIAAHLDAQG HSCDALRIGE FEHIDWEKYD YVAVGACVLY
GSYHKSVFEF VTRYQAELAA KPNSFFSVNV VARNPEKRIP ENNKYLQKFI ELSPWKPNDV
KVIAGKVDYP SWRWYDRWMI QLIMKITDGP TDPKAVIDYT DWEDVKLYAE HLLTLKD
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