| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0019 |
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| Symbol | fadB |
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| ID | 4920934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 21039 |
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| End bp | 23189 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640161531 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_001092151 |
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| Protein GI | 127510954 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00182619 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTACC AAAGTCCTAC GATTCAAGTG GAATTACTTG AAGACAATAT CGCTCGGCTC
TGTTTTAACG CCGAGGGCTC AGTCAATAAG TTTGATCGAG AGACCCTCAA CTCCCTTAAC
GACGCACTCG ATGCCCTAGC ACAAACCCAA GGGGTTAAGG GCCTGATGCT CACCTCGGGC
AAAGATGCCT TTATCGTAGG CGCCGATATC ACAGAATTCC TGGGACTTTT TGCACAAGAC
GACAACGTGC TACAGGGCTG GCTGGAAGAC GCCAACAAGG TGTTCAACAA GCTCGAAGAT
CTGCCCTTCC CAACTATCTC AGCCATCAAA GGCTTCGCCC TGGGCGGCGG CTGCGAAACT
ATCCTAGCCA CTGACTTACG TATCGCCGAT ACCTCGGCGC GTATCGGCCT GCCAGAGACT
AAGCTGGGCA TCATCCCAGG CTTTGGTGGT ACAGTGCGTC TGCCTCGCGT GATAGGTGCC
GACAACGCAC TTGAGTGGAT CACCACAGGT AAAGATCAAC GCCCGGAAGC CGCCCTCAAG
GTTGGCGCCA TCGACGCCGT AGTTGCTCCA GAATTGCTGG AAACGGCGGC GTGCCAGATG
CTGCAAGATG CCATCAGCGA GAAAATTGAC TGGCAAGCCC GTCGTCAGCG CAAACTGTCG
CCGCTGACCC TGCCTAAGTT GGAAGCCATG ATGTCATTTG CCACCGCCAA GGGCATGGTA
TTCAAGGTTG CCGGTAAACA CTATCCTGCG CCAATGGCTG TTGTCGAGGT GATCGAGAAA
GCCGCCTTGA GCGAGCGCGC CGAGGCACTA CAGGTAGAAC ATCAAGCCTT CATCAAGCTG
GCCAAGACAG ACGTGGCCAA GGCACTTATC GGTATCTTCC TTAACGACCA ACTAGTTAAA
GGCAAGGCCA AGAAGGCAGC CAAACAGGCA CAGGCGGTTA ACTCCGCCGC CGTGCTGGGC
GCAGGCATCA TGGGTGGCGG TATCGCCTAC CAGAGCGCAA GCAAGGGCAC GCCTATCGTG
ATGAAAGATA TCAATCAGGC GGCACTGGAT CTTGGCCTCA ACGAGGCAGC CAAGCTGCTC
ACGGCGCAGA TCAATCGTGG TCGCTCTACA CCAGCCAAGA TGGCGGGCGT GCTCAACAAC
ATCACGGCAA CCCTAGACTA CAACGCACTT AAGCAAGCCG ATGTCGTTGT CGAAGCAGTG
GTCGAGCATC CTAAGGTGAA GGCGACCGTA CTGGCGGAAG TCGAGCAGGT CGTGGGCGAA
GATGCCATCA TCACCTCTAA CACCTCCACC ATCTCAATCA ATCTGCTGGC CAAGAGCCTG
CAGAAACCTG AGCGCTTCTG TGGCATGCAC TTCTTCAACC CGGTACACAA GATGCCACTG
GTTGAGGTGA TCCGCGGCGA GCATAGCTCA GAAGAGACAG TTGCCTCTGT CGTGGCTTAC
GCCGCCAAGA TGGGCAAGAC GCCCATCGTG GTCAACGACT GCCCAGGCTT CTTCGTTAAC
CGTGTGCTCT TCCCCTACTT CGCCGGTTTC AGCGGCCTGC TAGAAGATGG CGCCGACTTT
GCTGCCATCG ACAAGGTGAT GGAGAAGCAA TTCGGTTGGC CTATGGGCCC CGCCTACCTA
CTTGACGTAG TTGGTCTGGA CACGGGTCAT CACGCCCAGG CCGTTATGGC CGAAGGCTTC
CCTGACAGAA TGGCTAAAGA AGGCAAAGAC GCCATCGACG TCATGTTCGA AGCCGATCGT
TTCGGTCAGA AGAATGGCAA AGGCTTCTAC CAATATTCGG TGGATCGTCG TGGCAAGCCT
AAGAAAGAGG TCGACCCACT CAGCTATGAA CTACTGGGCA ACGCCTTCGG TGAGCAGAAG
GAGTTCAGCA GTGACGAGAT CATCGCCCGC ACCATGATCC CTATGATCAT CGAAACGGTT
CGTTGTCTGG AAGAAGGCAT CATAGCCACG CCGGCCGAAG CCGATATGGG ACTCGTTTAT
GGACTCGGTT TCCCTCCATT CAGAGGAGGT GTGTTCCGCT ACCTAGACAC CTTAGGTGTC
GCTAACTTCG TCGCCCTTGC CGATCAGTAC GCCCACCTGG GTGGCCTGTA TCAGGTAACC
GACAAGATGC GTGAACTGGC TGCCACCAAC GGCAGTTACT ACCCAGCCTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIARL CFNAEGSVNK FDRETLNSLN DALDALAQTQ GVKGLMLTSG
KDAFIVGADI TEFLGLFAQD DNVLQGWLED ANKVFNKLED LPFPTISAIK GFALGGGCET
ILATDLRIAD TSARIGLPET KLGIIPGFGG TVRLPRVIGA DNALEWITTG KDQRPEAALK
VGAIDAVVAP ELLETAACQM LQDAISEKID WQARRQRKLS PLTLPKLEAM MSFATAKGMV
FKVAGKHYPA PMAVVEVIEK AALSERAEAL QVEHQAFIKL AKTDVAKALI GIFLNDQLVK
GKAKKAAKQA QAVNSAAVLG AGIMGGGIAY QSASKGTPIV MKDINQAALD LGLNEAAKLL
TAQINRGRST PAKMAGVLNN ITATLDYNAL KQADVVVEAV VEHPKVKATV LAEVEQVVGE
DAIITSNTST ISINLLAKSL QKPERFCGMH FFNPVHKMPL VEVIRGEHSS EETVASVVAY
AAKMGKTPIV VNDCPGFFVN RVLFPYFAGF SGLLEDGADF AAIDKVMEKQ FGWPMGPAYL
LDVVGLDTGH HAQAVMAEGF PDRMAKEGKD AIDVMFEADR FGQKNGKGFY QYSVDRRGKP
KKEVDPLSYE LLGNAFGEQK EFSSDEIIAR TMIPMIIETV RCLEEGIIAT PAEADMGLVY
GLGFPPFRGG VFRYLDTLGV ANFVALADQY AHLGGLYQVT DKMRELAATN GSYYPA
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