| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0013 |
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| Symbol | |
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| ID | 4922171 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 14072 |
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| End bp | 17275 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640161525 |
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| Product | amidohydrolase |
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| Protein accession | YP_001092145 |
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| Protein GI | 127510948 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.137513 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGG GAACTCCTAT GCTAAAACAA AAATTAACGC CCCTATGCAC GGCAATTGCC
CTCACACTTG CCCTGCCGAC CTGGGCGGCA GACAAAGATG CGCCTCCGGC CTGGCAGGTT
AATGCACCCG CCAAAGCCCC ACTGGAACAG GTTAAGATAG ATGTCACCGA AGGCACCTGG
ATGAACGTCA GTGTCAGCCC AGATGGCAAG CAGATAGTAT TCGACCTCCT GGGTGATATC
TATCAGATGC CCATCGAAGG CGGCGAAGCT AAGCCCCTGG CTCAAGGTAT CGCCTGGCAG
ATGCAACCCG TCTATAGCCC GGATGGCAAA TACATCGCCT TCACCTCAGA TGAAGATGGC
GGCGACAATA TTTGGGTGAT GAACGCCGAC GGCACAGATC CCCGCCCTGT CACCAAGGAA
ACCTTCCGCC TGCTCAATAG CCCGGCATGG AGCCCAGATT CTCAATATCT CATAGGCCGC
AAACACTTTA CCGGCAGCCG CAGCCTGGGA GCTGGCGAAG TCTGGCTATA TCACGTTGCC
GGCGGTACAG GCGTTAAGCT AACAGAGCGC CCCAATGAGC AGAAAGACCT GGGCGAACCC
GCCTACTCAC CAGATGGCCG CTACGTCTAC TTCAGCCAAG ATGCCACACC GGGTAAGACC
TTCCATTACT CCAAAGACTC GGTGAAAGGC ATCTATAAGA TCAAACGCTA CGACACCCAG
ACAGGTGACA TAGAGGTATT GGTCGAAGGC ACTGGCGGCG CGATTCGCCC AACCCCTAGC
CCGGATGGCA CTAAGCTCGC CTACATCAAG CGTGATGGTT TCCAATCTAC CCTCTACCTA
TTGGATCTCA AGTCTGGCAA GAAGACCAAG CTTTATGACA AGCTCGACCG TGACATGCAG
GAAACCTGGG CCATCCACGG CGTCTACCCA ACCATGAGCT GGACGGCAAA TAATGAAGAA
CTGGTCTTTT GGGCAGGCGG TAAGATCAAT CGTCTGGACA TCGAGAGTAA GTCGGCAAAA
GAGATCCCCT TCAAGGTGAA AACCGAACTG GCAGTTCAGC CTTCGGTGCG CTTCAAGCAG
AATCTCGATC AAGATAGCTT CGACGTGAAG ATGCTGCGCA TGGCGCAGGT ATCACCGGAC
GGCGACAAGG TGGTATATGA AGCCCTTGGT AAACTCTGGG TTAAGCGTCT ACCTGAGGGT
AAGGTAAGCC GCCTAACGGA CTTGGACGAC CAAGTCAGAG AACTCTATCC TCAGTGGTCT
CGCGACGGTA AGAAGATTGT CTTCACCACC TGGGACGACG ACCAACAGGG TAGTGTTCGT
GTCATCAACG CCAGAGGCGG TCGTAGCAAG ACATTGACCC AGGAGCCGGG CAAATATGTA
GAGCCCACCT TCTCACCCGA TGGTGAACTC GTAGTTTATC GTAAGATCAA GGGCGGTTAT
ATCACACCAC GCACCTGGTC ACAGGAGCCC GGCCTCTATG TTGTCGACAT CAAGGGCAAA
GAGAGCCGCA AGATAACACC CGATGGCTTT CAACCCCAGT TTGGTGCCGA GAGTGACCGT
GTTTATTTCA TGGATCATGG CGAGACACCT CAGCTCGCCT CGATCAACCT GCATGGCTTC
CAGAAACGGG TGCACTACAC CAGCAAGCAT GCCACCGAAT TCAGGGTCTC TCCAGACGGC
AAGCAACTCG CCTTTGCCGA GCGCTTCAAG GTGTGGGTTA CCCCATTTGC CAAGCATGGC
GAGACCATAG AGATAGGTCC TAAGGCCGAT AATCTCCCAG TGACTCAGCT CAGCGTGCGC
GCCGGTGAAA GCATCAGCTG GAACGGCGAC AGCGACCAGC TCTACTGGAC CCTAGGCCCA
GAGTTGTACC AGATGGATGT CGACGCCGAC TATCAGAGTG ATGAGAAGGC TGCAGCCATC
GAACCTAAGA TCACTCAGAT TGGTTTCGAT AAGCGAGCTG ATGTTCCACG TGGAACCATA
GCCTTCGTCG GTGGCCGAGT GATCACCATG GAAGAGGACA AGGTGATCGA AAACGGTGTG
GTAATCGTCG AGAATAACAA AATCGTCGCC GTCGGCGACG CCAACACTCA GGTGCCTAAG
GGTGCACAGG TTATCGACAT CAAGGGTAAG AGCATAATGC CAGGCCTGTT CGATGCCCAC
GCCCACGGCG CTCAGGGCGA GAATGAGATC ATTCCACAGC AGAACTGGGA GCTCTACGCT
AATCTGGCGC TTGGGGTAAC CAGTATTCAC GACCCTTCAA ACGACACTAC AGAGATCTTC
GCCGCCTCTG AGCAGCAGAA GGCCGGTAAC ATTGTCGGGC CGAGAATCTT CTCTACCGGG
ACGATTCTCT ATGGTGCCAA CATGCCGGGC TATACCTCTC ACATCGACTC GGTAGACGAC
GCCAAGTTCC ATCTGGAGCG CCTGAAGAAG GTTGGCGCCT TCAGTGTGAA GAGCTATAAC
CAGCCAAGGC GCAATCAGCG TCAACAGGTG ATTGCCGCGG CGAGAGAACT TGAGATGATG
GTAGTCCCGG AAGGTGGCAG CCTGCTGCAG CATAACCTGA CCATGATCGC CGATGGCCAC
ACCACGGTAG AGCATTCGCT GCCCGCCGCA GCCATCTACA GCGACATCAA GCAATTCTGG
AGTCAGACAG AGGTTCACTA CACGCCGACA CTGGTCGTCG CCTACGGTGG TATCTCGGGC
GAGAACTATT GGTACGATAA GACGGATGTC TGGGCTCACC CTCGCCTGTC TAAGTATGTG
CCAAGCGATC TGCTAGAGGC CCGCTCTATG CGTCGCCCTA CCGCTCCCGA TGCTCACTAT
AACCACTTCA ACGTTGCCAG AGTCGCCAAC GAACTCAACG AGCTGGGTGT GAAACCCAAC
ATTGGTGCCC ACGGTCAACG CGAAGGCTTA GCCGCTCATT GGGAGATGTG GATGTTTGCC
CAGGGTGGCA TGAGCAACAT GGAGGTGCTG AAGACGGCAA CCATCAACCC GGCGGAAACC
TTTGGCATGG ATCATCAACT CGGTTCGATC AAGACTGGTA AGCTTGCCGA CCTGATCGTT
ATCGACGGAA ATCCACTTGA GAATATCCGT GTCACAGATA AGGTGAGTTA CACCATGGTC
AACGGTAAGT TGTTCGATGC CGAGTCGATG AATCAACTCA ATGGTGACAA GACTAAACGT
AAGCCGTTTT TCTTCGAAAT TTAA
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| Protein sequence | MKLGTPMLKQ KLTPLCTAIA LTLALPTWAA DKDAPPAWQV NAPAKAPLEQ VKIDVTEGTW
MNVSVSPDGK QIVFDLLGDI YQMPIEGGEA KPLAQGIAWQ MQPVYSPDGK YIAFTSDEDG
GDNIWVMNAD GTDPRPVTKE TFRLLNSPAW SPDSQYLIGR KHFTGSRSLG AGEVWLYHVA
GGTGVKLTER PNEQKDLGEP AYSPDGRYVY FSQDATPGKT FHYSKDSVKG IYKIKRYDTQ
TGDIEVLVEG TGGAIRPTPS PDGTKLAYIK RDGFQSTLYL LDLKSGKKTK LYDKLDRDMQ
ETWAIHGVYP TMSWTANNEE LVFWAGGKIN RLDIESKSAK EIPFKVKTEL AVQPSVRFKQ
NLDQDSFDVK MLRMAQVSPD GDKVVYEALG KLWVKRLPEG KVSRLTDLDD QVRELYPQWS
RDGKKIVFTT WDDDQQGSVR VINARGGRSK TLTQEPGKYV EPTFSPDGEL VVYRKIKGGY
ITPRTWSQEP GLYVVDIKGK ESRKITPDGF QPQFGAESDR VYFMDHGETP QLASINLHGF
QKRVHYTSKH ATEFRVSPDG KQLAFAERFK VWVTPFAKHG ETIEIGPKAD NLPVTQLSVR
AGESISWNGD SDQLYWTLGP ELYQMDVDAD YQSDEKAAAI EPKITQIGFD KRADVPRGTI
AFVGGRVITM EEDKVIENGV VIVENNKIVA VGDANTQVPK GAQVIDIKGK SIMPGLFDAH
AHGAQGENEI IPQQNWELYA NLALGVTSIH DPSNDTTEIF AASEQQKAGN IVGPRIFSTG
TILYGANMPG YTSHIDSVDD AKFHLERLKK VGAFSVKSYN QPRRNQRQQV IAAARELEMM
VVPEGGSLLQ HNLTMIADGH TTVEHSLPAA AIYSDIKQFW SQTEVHYTPT LVVAYGGISG
ENYWYDKTDV WAHPRLSKYV PSDLLEARSM RRPTAPDAHY NHFNVARVAN ELNELGVKPN
IGAHGQREGL AAHWEMWMFA QGGMSNMEVL KTATINPAET FGMDHQLGSI KTGKLADLIV
IDGNPLENIR VTDKVSYTMV NGKLFDAESM NQLNGDKTKR KPFFFEI
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