Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shew_0007 |
Symbol | |
ID | 4922270 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella loihica PV-4 |
Kingdom | Bacteria |
Replicon accession | NC_009092 |
Strand | - |
Start bp | 7793 |
End bp | 8725 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640161519 |
Product | urea amidolyase related protein |
Protein accession | YP_001092139 |
Protein GI | 127510942 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1984] Allophanate hydrolase subunit 2 |
TIGRFAM ID | [TIGR00724] biotin-dependent carboxylase uncharacterized domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00148703 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATGCGGC TCGATAGGGT AAACGGCCTA GCCAGCATTC AAGACCTTGG CAGGCAGGGA CAGGGGCACC TAGGCATACC AAGCGGTGGC GCCATGGATA GCTTCTCGCT GATCCTGGCC AACCGCCTGC TGGGCAATGA GGATAACGCC CCCGCCATCG AGCTCGCCAG TGGCAGCTAT GAGTTCACCT TCAAGACCCC GAGCTGGGTC GCCCTGTGCG GCGCCAGCTT CGAGGCCAAG ATAGATGATC GTCCCCTGTG GCACAGCTGG CGCGGCCGGG TGAATCCGGG GGAACGCCTG ACGCTGAAGG GACCGAGACA AGGCGTGTGG GGCTACCTGG CAATCCTCGG CGGTATCGAG GTCCCCGAGG TTCTCGGAGG TCACGGCACC TTCCTGGCAG GACGGTTCGG TGGCCATCAG GGGCGACAAC TCGCCTCGGG CGATACTCTT AGCCTGAATC CCCATACTGA AGCAAACTTC AGTCGCCCGG TCGGTGCGGT GCACAGGGCC AACGACGGCA TACTGCGCGC CCTCCCCGGG CCAGAGATGA GCCAGTTCAG CGATCAGGAT CGCAAGGCCT TCTGGCATGG CCACTGGACC GTTTCGCCCC AGAATGATCG CATGGGCGCC CGGTTGACAG GCGAGTCTCT GGACTCTGGT AAACATCTGA GTCTGCGCTC CCACGCCGTG CTACCGGGCG TGGTTCAGGT GCCGCCGGGT GGCCAACCTA TAGTGCTACA GGCCGATGCC CAAACCAGCG GCGGCTACCC GAGAATGGCC ATGGTGATCG AGGCCGACCG CTGGAAACTG GCCCAGGCCA GAGCAGGGCA AGCGATCCGC TTTCAGCATG TCAGCCCCAA TCAGGTGGAA GATGCTAACC TTGAATGGCA ACACTATTTC TATCGCTTAG CGAGGGCAAT GGATGGGAGT TAA
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Protein sequence | MMRLDRVNGL ASIQDLGRQG QGHLGIPSGG AMDSFSLILA NRLLGNEDNA PAIELASGSY EFTFKTPSWV ALCGASFEAK IDDRPLWHSW RGRVNPGERL TLKGPRQGVW GYLAILGGIE VPEVLGGHGT FLAGRFGGHQ GRQLASGDTL SLNPHTEANF SRPVGAVHRA NDGILRALPG PEMSQFSDQD RKAFWHGHWT VSPQNDRMGA RLTGESLDSG KHLSLRSHAV LPGVVQVPPG GQPIVLQADA QTSGGYPRMA MVIEADRWKL AQARAGQAIR FQHVSPNQVE DANLEWQHYF YRLARAMDGS
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