| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shew_0006 |
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| Symbol | |
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| ID | 4921837 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella loihica PV-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009092 |
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| Strand | - |
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| Start bp | 7075 |
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| End bp | 7803 |
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| Gene Length | 729 bp |
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| Protein Length | 242 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640161518 |
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| Product | LamB/YcsF family protein |
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| Protein accession | YP_001092138 |
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| Protein GI | 127510941 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1540] Uncharacterized proteins, homologs of lactam utilization protein B |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.00154728 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGGGAGTTA AGCCGCTAAG AATCGACCTC AACGCCGACC TCGGCGAGGG AGGCCCACAG
GACGAGGCGC TGCTGACACT GGTCACCTCG GCCAATATCG CCTGCGGCGG TCACGCCGGC
GATCGCCAGA GCATGCTGGC GACGGTCAAA CTCGCAAAAG CGCACCATGT AAAGGTCGGG
GCTCACCCCA GCTATCCCGA CAGAGCTAAT TTCGGCCGCC TATCTATAGC CATAGAGGCG
GAACCGCTTT TTAACTCGCT ATTACAACAG ATTAATGCCT TAAAGGCCGT ATGCGACGAG
CTAGGCGTCG ATCTCCACCA CGTGAAGCCT CACGGTGCCC TGTACAATGA TGCGGCTCAG
GATCCCGCCC TAGGCCGTAT TCTCATTCGG GTCATAGAGA CGATCAATCC AACGCTTAAG
CTGATGATAT TGGCGGGTAG CCCCTTGGTC ATGCAGGCGA GACGCGCCGG CCTTGAGGTG
ATCGAAGAGG CCTTCGCCGA TCGCGGCTAC CTCGCCGATG GTCGGCTTGC CCCTCGCTCA
CAGCCTGGCG CGCTTATCGA AGATGCCCAG AAGGTACTTG AACAAGTTAG CTCCATAGTC
GAAGAGCAGA AAGTGACGGC GGTGACGGGT GAATCGGTAA GCTGCCATGC CACCAGCCTC
TGCCTGCATG GTGACACCCC GAAGGCACTT GAGTTCGCCA GGGCAATTCG CGCCAGCCTA
GATCATTAA
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| Protein sequence | MGVKPLRIDL NADLGEGGPQ DEALLTLVTS ANIACGGHAG DRQSMLATVK LAKAHHVKVG
AHPSYPDRAN FGRLSIAIEA EPLFNSLLQQ INALKAVCDE LGVDLHHVKP HGALYNDAAQ
DPALGRILIR VIETINPTLK LMILAGSPLV MQARRAGLEV IEEAFADRGY LADGRLAPRS
QPGALIEDAQ KVLEQVSSIV EEQKVTAVTG ESVSCHATSL CLHGDTPKAL EFARAIRASL
DH
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