| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA10247_A1203 |
|---|
| Symbol | oprB |
|---|
| ID | 4889128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei NCTC 10247 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009079 |
|---|
| Strand | + |
|---|
| Start bp | 1172153 |
|---|
| End bp | 1173691 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640147471 |
|---|
| Product | outer membrane efflux protein OprB |
|---|
| Protein accession | YP_001078389 |
|---|
| Protein GI | 262192860 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.21076 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCGCACGG CGGTTCGCGC CGCCGCCGTC GCGGCCGCCT TCTTCGCCGC GGGCTGCACG
CTCGCGCCGC GCTACGAGCG TCCGGCCGCG CCGGTGTCGG GCGCGTTCCC CGCCGACGGC
GTCTATGCCG CGCAGCCGGG CGCCGCGCCC GGCGCGCGCA GCGCGAACGG CCAGGCGGCC
GTCGATATCG GCTGGCGCGA GTTCTTCGTC GATCCGCGCC TGCAGCGGCT GATCGAGATC
GCGCTGAAGA ACAACCGCGA CCTGCGCGTG TCGGTGCTCA ACGTCGAGGC GTCGCGCGCG
CAGTATCAGA TCACGCGCGC GGGGCTCTTC CCGACGTTGA GCGGCACCGG CACGGGCACG
ATCCAGCGCA CGCCGGCCGG CGTGTCGATC ACCGGCCAGC CGCTCATCTC GCGGACCTAC
AACGTCGGCG TCTCCGCGTC GTGGGAGCTC GACCTGTTCG GCCGCGTGCA GAGCCTGAAG
GACCAGGCGC TCGCGCAATA CTTCGCCACC GCGCAGGCGC GCAAGGCCGC GGAGATCTCG
CTCGTCGCGA GCGTCGCCGA TCAGTACCTG ACGCTGCTGT CGACCGACGA TCTGCTGCAG
GTCACGCAGA ACACGCTGAA GTCGGCGCGC GCGTCCTACG ATCTGACGAA GCTGCAGTTC
GACAACGGCA CCGGCTCGGA GCTCGACCTG CGCCAGGCGC AGACGGTGGT CGAGACCGCG
CTCGCGAGCC AGCAGGCGCA GGCGCGCGCC CGCGCGCAGG CGCTCAACGC GCTCGTGCTG
CTGATCGGCG AGCCGCTGCC CGACGATCTG CCGGCCGACC TGCCACTCAA TGCGCAGAAC
CTGCTCACCG ACATTCCGGC CGGGCTGCCG TCCGATCTGC TCACGCGGCG GCCCGACATC
ATGCAAGCCG AGGAGACGCT GCGCGCGGCG AACGCGAACA TCGGCGCGGC GCGCGCGGCG
TTCTTCCCGA AGATCTCGCT CACCAGCGCG TTCGGCACCG CGAGCACGAC GCTCGGCGGC
CTGTTCAAGG CGGGCACGGC GGCGTGGTCG TTCGCGCCGA ACATCGCGCT GCCGATCTTC
GAGGGCGGGC AGAACATCGC GAACCTCGAT CTCGCGCACG TGCAGAAGCG CATCGAGATC
GCGAACTACG AGAAGGCGAT CCAGAGCGCG TTTCGCGAGG TGTCGGACGG GCTTGCCGCG
CGCGGCACGT ACGATCAGCA GATCGCGGCG CTCGAGCGCA ACGAGCACGC GCAGCAGCGC
CGCTACGATC TGTCGGACCT GCGCTACAGG AACGGCGTCG ACAGCTATCT GTCGGTGCTG
ACCGCGCAGA CGGACCTGTA TTCGGCGCAG CAGCAGTTGA TCAGCGCGCG GCTCGCGCGC
TGGACGAACC TCGTGGACCT GTATCGCGCG CTGGGCGGCG GGTGGCTCGA GCGCGCGGGC
GAGACGCCGC GCCCGGCGGA CGCGCCCGTC GATTACGGCA AGGCGGCGCC CGCGCCGGCG
GCGTCGGCAT CGGCGCGAAC AGCGGCCGTG ATTGGTTGA
|
|---|
| Protein sequence | MRTAVRAAAV AAAFFAAGCT LAPRYERPAA PVSGAFPADG VYAAQPGAAP GARSANGQAA
VDIGWREFFV DPRLQRLIEI ALKNNRDLRV SVLNVEASRA QYQITRAGLF PTLSGTGTGT
IQRTPAGVSI TGQPLISRTY NVGVSASWEL DLFGRVQSLK DQALAQYFAT AQARKAAEIS
LVASVADQYL TLLSTDDLLQ VTQNTLKSAR ASYDLTKLQF DNGTGSELDL RQAQTVVETA
LASQQAQARA RAQALNALVL LIGEPLPDDL PADLPLNAQN LLTDIPAGLP SDLLTRRPDI
MQAEETLRAA NANIGAARAA FFPKISLTSA FGTASTTLGG LFKAGTAAWS FAPNIALPIF
EGGQNIANLD LAHVQKRIEI ANYEKAIQSA FREVSDGLAA RGTYDQQIAA LERNEHAQQR
RYDLSDLRYR NGVDSYLSVL TAQTDLYSAQ QQLISARLAR WTNLVDLYRA LGGGWLERAG
ETPRPADAPV DYGKAAPAPA ASASARTAAV IG
|
|---|
| |