| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A0566 |
|---|
| Symbol | |
|---|
| ID | 4905817 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009078 |
|---|
| Strand | + |
|---|
| Start bp | 557090 |
|---|
| End bp | 559492 |
|---|
| Gene Length | 2403 bp |
|---|
| Protein Length | 800 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640143672 |
|---|
| Product | capsular polysaccharide biosynthesis/export protein |
|---|
| Protein accession | YP_001074602 |
|---|
| Protein GI | 126456078 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1596] Periplasmic protein involved in polysaccharide export |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTTCGCGC ATGCGCAAAT CGTCCCTTTC GTTCCGTCTG CATCCGCCGG CGCGGACGCG
CGTTCGGCGG TGCCGCTGCC GCCGATCGAC GGCCTGCCGG CGGCGGACGG CCTGAGCGTG
CGGCAACGCG ACGCGCTTCA GCCGCCGCTG CCGGGCGCGA AGCTGACGAA GGACGCCACG
ACGAAAGACG GCCTGTTGAA GGACGGCGCC GCGCTGAACG AGCCGCCGCG CCCCTGCGGG
CCGCTCGGAT GCCGTGGCGA AGCGATCGAT TGCCCGCCGT CGGCCGACGG CCGGCCGACG
TCCATTACGC GCCGGGCGGA CGGCACGCCC GAATTGCCGG ATCCGTGCGG GCGGCCGCGC
GCCGCTTCGC AACCGGCGCT GACCGATTTT CAGGTCTTCG TGCAGCAGAG CACGGGCCGC
GCGTTGCCGC TGTTCGGCTA CAACTTCTTT TCGACGACGA CGACCTACCG GTCGCTCGAC
AACGTTCCGG TTCCCGACGA TTACGTGCTC GGCCCCGGCG ACGAAGTGCT GCTGCACGCG
TGGGGCGGCG TCGCGGGCGA TCAGCGCCTC GTCGTCGACC GCAACGGTCA GGTGAGCATT
CCGGGCGTCG GTGTCGTGAC GGTGGCGGGC GCGCGCGCGT CCGAGCTCGA TTCGCTGCTG
CGCGGCGGGC TTGGCCGATA TTTCACGGAT TTCAACGTGA ATGCGGCGCT CGGGCGTCTG
CGATCGATCC CGGTGTATGT CGTCGGCAAG GCGATGTCGC CCGGCAGCTA CACGGTGCCC
GGCACGTCGA CGATCATCGG CGCGTTGTTC GCGAGCGGCG GCCCCGCGTT CAACGGCTCG
ATGCGCGCGG TGGCGCTGTA TCGCAATGGC CGGCAGATCG CCGCGCTCGA CGTCTACGGC
TTTCTCACGC GCGGCGCGGT GAAGGACGAT GTCCATCTGC TGCCGGGCGA CGTCATCGTC
ATTCCGCCCG CCGGGCCGCG CGTCGCGCTG ACGGGCGCGC TCGACGCGCC CGGCATCTAC
GAGCTGCGCA AGACGAGCGA AACGTTGCGC GAGCTGCTCG ACGACGCGGG CGGCGTCACC
GCGCTCACGA GCCTCGACCG CGTGATGATC GAACGGGTGA ACCCGGCCGA CGGCGCCGCG
CCGCGTTCCG TGCAGGAAGT GCGGCTCGAC GAAGCGGGGC TCGCGACGGT CGTGAAGGAC
GGCGACATCG TGACGCTGTC GATGGTGTCG CAGAAATTCT CGAACGCCGT GACGCTGCGC
GGCAACGTCG CCGCGGCGCT CAGGTATCCG TACAAACCGG GCATGACGCT CGCCGATTTG
CTGCCGTCCC CGGAGGCCGT GCTGACGCCC GACTACTTCA CGCGCAAGAA CATTCTCGTC
GAATACGCGA AGAGCGGCGG CGCCGACCGG CGGCCGTTCG ACGGCATCCG CAATCTCGTC
GACGAGCCCA ACTGGCACTA CGCGATCATT CAGCGGCTCG ACCCCGTCAC GCTGACCGAG
AACGTGATCG CGTTCAACCT GCGCGCGGTG ATGACGAAAG GCAGCGCCGA GGCCGGCATC
GCGCTGCAGC CCGGCGACGT GGTGACGATT TTCGGCAAGC GGGACCTGCG CAACCCGGTC
GACGACAACA AGAGCCTCGT TCGCGTGGAC GGCGAAGTGC GCGCACCCGG CGTCTACCAG
CTCAACGCGG GCGAATCGCT GCGCGAGCTG CTGCAGCGCG CGGGCGGCCT GACAAGCAAC
GCGTATGTGT TCGGCCTCGA GTTCACGCGC GAATCCACCC GCAGCCAGCA GCAGCAGAAC
CTGAACGCCG CGCTCGACCG CGCGACGTTG CAGGCGAACA GCAAGCTCGC CGCGGCGCTC
GCGAACCTGC CGAGCGGCGA CACGCAGTAT CTGCAGGCTC AGATGGCGGC CGCGCAGCAG
GCGCAACTCG CGCGGCTGCG CGAGCTCAAG CCGACGGGGC GCGTGTCGCT CGAGCTGAGC
ACGCGCGCGA GCCGCATCGG CGATCTGCCC GATCTGCCGC TGAACGACGG CGATGCGATT
TACGTGCCGC CGGTGCCGGC GTTCGTGACC GTCTACGGCG CGGTCGACAA TCAGAACGCG
GTGATCTGGA AGCTGCATCG AACGGTCGCC GATACGTTGA GGGTCGCGGG CGTCCAGCGG
GACATCGCGG ACCTCGACGC CGCATTCGTG CTGCGCGCCG ACGGCAGCGT CGCGTCGGCG
AGCAGCGCCG GCTGGTTCGG CAGCTTCGGC GCGCTCGAGC TGATGCCGGG CGACGCGCTC
GTGGTTCCCG AGAAGCTCGA CCGGCGCACC GCGATGACGA AGTTCCTCGC CGGCCTCAAG
GACTGGTCGC AGGTGCTGGC CAATTTCGGC CTGGGCGCGG CGGCAATCAA GGTGCTCAAG
TAA
|
|---|
| Protein sequence | MFAHAQIVPF VPSASAGADA RSAVPLPPID GLPAADGLSV RQRDALQPPL PGAKLTKDAT
TKDGLLKDGA ALNEPPRPCG PLGCRGEAID CPPSADGRPT SITRRADGTP ELPDPCGRPR
AASQPALTDF QVFVQQSTGR ALPLFGYNFF STTTTYRSLD NVPVPDDYVL GPGDEVLLHA
WGGVAGDQRL VVDRNGQVSI PGVGVVTVAG ARASELDSLL RGGLGRYFTD FNVNAALGRL
RSIPVYVVGK AMSPGSYTVP GTSTIIGALF ASGGPAFNGS MRAVALYRNG RQIAALDVYG
FLTRGAVKDD VHLLPGDVIV IPPAGPRVAL TGALDAPGIY ELRKTSETLR ELLDDAGGVT
ALTSLDRVMI ERVNPADGAA PRSVQEVRLD EAGLATVVKD GDIVTLSMVS QKFSNAVTLR
GNVAAALRYP YKPGMTLADL LPSPEAVLTP DYFTRKNILV EYAKSGGADR RPFDGIRNLV
DEPNWHYAII QRLDPVTLTE NVIAFNLRAV MTKGSAEAGI ALQPGDVVTI FGKRDLRNPV
DDNKSLVRVD GEVRAPGVYQ LNAGESLREL LQRAGGLTSN AYVFGLEFTR ESTRSQQQQN
LNAALDRATL QANSKLAAAL ANLPSGDTQY LQAQMAAAQQ AQLARLRELK PTGRVSLELS
TRASRIGDLP DLPLNDGDAI YVPPVPAFVT VYGAVDNQNA VIWKLHRTVA DTLRVAGVQR
DIADLDAAFV LRADGSVASA SSAGWFGSFG ALELMPGDAL VVPEKLDRRT AMTKFLAGLK
DWSQVLANFG LGAAAIKVLK
|
|---|
| |