| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_A0418 |
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| Symbol | oprC |
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| ID | 4906049 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia pseudomallei 1106a |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009078 |
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| Strand | + |
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| Start bp | 395394 |
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| End bp | 396926 |
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| Gene Length | 1533 bp |
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| Protein Length | 510 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 640143525 |
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| Product | outer membrane efflux protein OprC |
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| Protein accession | YP_001074461 |
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| Protein GI | 126457420 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAGA CCAACATCAA CGAACGCATC GCGCGCGTCG CGAAGATCGC GGCGGCGAGC
GGGTTGCTCG TCGCGCTGCT CGCCGCGTGC GCGGTGGGGC CCGACTACCG GCGGCCCGAT
GTCGCGACGC CCGCGGCGTT CAAGGAAGCG CCGGCGCTCG CGCCGGGCGA GCAGGCCGGC
ACGTGGAAGG CGGCCGAGCC GGCCGACGCC GCGCATCGCG GCGAATGGTG GCGCGTATTC
GGCGATCCGG TGCTCGATGC GCTCGAAACG CAGGCGCTTG CCGCGAACCA GAACCTGAAG
GCCGCGGCGG CGCGCGTCGA GCAGGCGCGC GCGGCGACCC GCGCCGCGCG CTCGCAGTGG
TTCCCGCAAG TGGGCGTGGG CTTCGGGCCG ACGCGCGAGG GGCTGTCGTC GGCGTCGCAG
TTCCAGCCGC AGGGAAGCGG CCCGACGAAC GCGACGCTCT GGCGCGCGCA GGGCACGGTG
TCGTACGAAG CGGACCTGTT CGGCCGCGTC GGCCGCAACG TCGAAGCGTC GCGCGCGGAC
GAAGCGCAGA GCCAGGCGCT GTTCCGCTCG GTGCAGCTCG CGTTGCAGGC GGACGTCGCG
CAGAACTACT TCGAGCTGCG CCGGCTCGAT TCCGACCAGG ATCTGTACCG GCGCACGGTC
GGGCTGCGCG AGGAGGCGCT CAAGCTCGTG CAGCGGCGCT TTGCCGAAGG CGACATCAGC
GAGCTCGACG TGTCGCGCGC GAAGAACGAA CTGGCGACCG CGCAGGCGGA CGCGGTGGGC
GTCGCGCGGC GGCGCGCCGC ATCGGAGCAT GCGCTCGCGA TCCTGCTCGG CAAGGCGCCC
GCGGATTTCT CGTTCAGCGA GACGCCGATT GCGCCGGTGG CGGTGCGCGT GCCGGCGGGG
CTGCCGTCGG CATTGCTCGA GAGGCGGCCC GACATCGCGG CGGCCGAGCG CGCGATGATG
GCCGCGAACG CGCGCATCGG CCTCGCGAAG TCCGCGTACT TCCCGAAGCT CGACATCACC
GGCGCGTTCG GCTATGAGGC GGCGACGCTC GGCAACCTGT TCCTGTGGTC GAGCCGCACG
TTCCTGCTCG GGCCGTTCGC GGGCACGGCG CTCACGCTGC CGATCTTCGA CGGCGGGCGC
CGCAGCGCGG GCGTCGCGCA GGCGCGCGCG AAGTACGACG AGGAAGTCGC GAACTACCGG
CAGCAGGTGC TCGTCGCGTT CCGCGAAGTG GAGGACAACC TTGCCGATCT GCGTCTGCTC
GACGATCAGA TCCGCGCGCA AAGCGACGCC GTCAACGCGT CGCGGCGCGC GGCGAAGCTG
TCGCGCACGC AGTATCAGGA AGGCGCGGTC AGCTATCTCG ACGTGATCGA CAGCGAGCGC
TCGGTGCTCG AATCGCAACT GCAATCGAAC CAGTTGACGG GTACGCAGGC GGTATCGACG
GTCAACCTGA TTCGCGCGCT CGGCGGCGGC TGGGGGAGCG ATGCTGCGCT CGGCTCGCGC
GAGCCGGGCA AGCAGGACGT CGCGACGCGT TGA
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| Protein sequence | MNKTNINERI ARVAKIAAAS GLLVALLAAC AVGPDYRRPD VATPAAFKEA PALAPGEQAG
TWKAAEPADA AHRGEWWRVF GDPVLDALET QALAANQNLK AAAARVEQAR AATRAARSQW
FPQVGVGFGP TREGLSSASQ FQPQGSGPTN ATLWRAQGTV SYEADLFGRV GRNVEASRAD
EAQSQALFRS VQLALQADVA QNYFELRRLD SDQDLYRRTV GLREEALKLV QRRFAEGDIS
ELDVSRAKNE LATAQADAVG VARRRAASEH ALAILLGKAP ADFSFSETPI APVAVRVPAG
LPSALLERRP DIAAAERAMM AANARIGLAK SAYFPKLDIT GAFGYEAATL GNLFLWSSRT
FLLGPFAGTA LTLPIFDGGR RSAGVAQARA KYDEEVANYR QQVLVAFREV EDNLADLRLL
DDQIRAQSDA VNASRRAAKL SRTQYQEGAV SYLDVIDSER SVLESQLQSN QLTGTQAVST
VNLIRALGGG WGSDAALGSR EPGKQDVATR
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