| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_3879 |
|---|
| Symbol | |
|---|
| ID | 4900681 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | - |
|---|
| Start bp | 3774386 |
|---|
| End bp | 3776071 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640137105 |
|---|
| Product | outer membrane hemolysin activator protein |
|---|
| Protein accession | YP_001068100 |
|---|
| Protein GI | 126454471 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2831] Hemolysin activation/secretion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTGT CGGCGCAAGA AGCTCCCCGT CTCATCATTC CGGGCAACGA CCAGCAAACC
CGACAGCAGG AAGAGGCACG AGAGCGTGAA CGGGTAGTCT CCGCGCCCGG GGTGCGATCG
GAAGTGATGC GAAGTGCTGA GTATCCAACG CTGCCTTCTG AAACGCCTTG CTTTCGGATC
AAGCGTTTCG TACTCGAGGT ACCCGATGCG CTGCCTGCTT CCCTGAAATC GCAAGGCGCA
TCGGCATTGC CGATGGATCG CTTCGCATTC GCGCGTGAAT GGCTTGGGCA CTACGCGGGC
GCGTGCGTTG GCAAACAGGG TCTCGATTTG CTCGTCAAAG GCTTGTCGCA AGCGATCCTG
GCGCGCGGTT ATGTGACGAC GCGCGTGCTG CTGCCCGAAC AGGATCTGTC GACTGGCACC
CTCAAGTTTT CACTGGTTCC TGGCGTAATC CGCCATGTGC ATTTTGCCGA CGAGAAGCTC
CGCGGCACGT GGAAAACCGC CTTTCCGACT CGCGACGGCG AACTACTGAA CCTGCGCGAC
CTCGAACAAG GCCTCGAACA GATGAAGCGC GTGACGAGCC AGGACGTATC GATGCAGATC
GTCCCAGCCG ACGTTCCCGG CGAAAGCGAC GTGGTGCTCG ACGTAAAGCG CACTAAGCCC
TGGACGGTCG TCGCTTCGAT CGACAACTCG GGCACGCGCG CTACGGGCCG CCTTCAGGGG
AACTTGTCGC TCGGTATCGA CAATCCCCTT GGCCTGAACG ATATCTTCAA CATTGGCGTG
AGCCAGGATC TGGAATTCGG CGACAAGCGA CTCGGCTCGC ATGGCTGGAA CGGTTTCTAC
TCGATCCCGT GGGGCTATTG GACCGCCACA CTATCGGCGT ACACCAACAC GTACTACCAG
CAAATCGCTG GCGTGAATCA AACGTTCATC GCGAGCGGCA ATTCAAAGAC AGTTGATTTC
AAGCTGAGCC GCGTGCTGTC GCGTAGCCAG AACGACGTGT TCGGTGCTCA GTTTCGCTTG
TCGCGCCGGT TTGGGCAAAG CTTCATCGAG GACACGGAAA TTCCGCAGCA GCGTCGCAAC
AACACGTTCG TCGAGTTCGG CCTGACCGAT CGCCATTATT TTGGCAATGC GCAGTTCGAC
GGGATGCTCG CTTACCGGCA GGGTATCGGC GCGTTCGGCG CGCAGGACGA CAGCCTCGCG
GCAGACGGCG GTCCGACCTA CCGCTACAAG ATGGCCGTGC TCGATGCGAA TCTGTCAGTG
CCGTTCGCAA TCGCGCAGCA GCCGTTCCGC TACGTGACGA CGTTCCACGG ACAATACACG
GGCAACACGC TGTACTACAT CGACGACCTG ACGATCGGCA GTCGTTACAC AGTACGTGGA
TTCGACGGAG AGACGATGCT GGCCGCCTCC CGCGGCCTCT ATTGGCGCAA CGAACTGCAG
GCGCCGATCG GCCAAACCGG GCAGGCGATA TACGCGGGCA TCGACTACGG CCGCGTGTGG
GGCCCGCAAC CCGTCACCCT CGTCGGCACG CAGCTGGCGG GCGCCGTGAT AGGCGTAAAG
GGCAGTGTCG CGACTCGATT GGGCGCCTAT GGTTACGACC TGTTTGCCGG AACGCCGATC
TACAAGCCGT CCGGGTTTCC TACGGCACGC GTGACGGTTG GTTTTCAGGT CACCGCACAG
TTCTGA
|
|---|
| Protein sequence | MAVSAQEAPR LIIPGNDQQT RQQEEARERE RVVSAPGVRS EVMRSAEYPT LPSETPCFRI
KRFVLEVPDA LPASLKSQGA SALPMDRFAF AREWLGHYAG ACVGKQGLDL LVKGLSQAIL
ARGYVTTRVL LPEQDLSTGT LKFSLVPGVI RHVHFADEKL RGTWKTAFPT RDGELLNLRD
LEQGLEQMKR VTSQDVSMQI VPADVPGESD VVLDVKRTKP WTVVASIDNS GTRATGRLQG
NLSLGIDNPL GLNDIFNIGV SQDLEFGDKR LGSHGWNGFY SIPWGYWTAT LSAYTNTYYQ
QIAGVNQTFI ASGNSKTVDF KLSRVLSRSQ NDVFGAQFRL SRRFGQSFIE DTEIPQQRRN
NTFVEFGLTD RHYFGNAQFD GMLAYRQGIG AFGAQDDSLA ADGGPTYRYK MAVLDANLSV
PFAIAQQPFR YVTTFHGQYT GNTLYYIDDL TIGSRYTVRG FDGETMLAAS RGLYWRNELQ
APIGQTGQAI YAGIDYGRVW GPQPVTLVGT QLAGAVIGVK GSVATRLGAY GYDLFAGTPI
YKPSGFPTAR VTVGFQVTAQ F
|
|---|
| |