Gene BURPS1106A_3576 details

Gene Information

• Locus tag: BURPS1106A_3576
• Symbol: paaD
• ID: 4901405
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: +
• Start bp: 3484812
• End bp: 3485288
• Gene Length: 477 bp
• Protein Length: 158 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640136802
• Product: phenylacetic acid degradation protein PaaD
• Protein accession: YP_001067807
• Protein GI: 126452791
• COG category: [Q] Secondary metabolites biosynthesis, transport and catabolism
• COG ID: [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism
• TIGRFAM ID: [TIGR00369] uncharacterized domain 1; [TIGR02286] phenylacetic acid degradation protein PaaD

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCCGCAC GCTCTCCCGA ACGCTCGCCA ACGGCGACCG CAGAACGCTC CGCCGAAGCG 
CTCGCCCGCG CAACCGCCGA AGCAATGTAC GCCGCGGACG CCTGCAGCCG CAGCCTCGGC 
ATCGAGGTGC TCGAAGTGCG GCCGGGCTAC GCACGCGCGC GCATGCCCGT GCGCGGCGAT 
TTTCTGAACG GTCACCAGAT CTGCCATGGT GGGCTCGTCT TCACGCTCGC GGATTCGACC 
TTCGCATTCG CTTGCAACTC GTACAACATC AATACGGTCG CAGCCGGCTG CTCGATCGAA 
TTCCTGCGCC CGGTGGCGGG CGGCGACGTG CTCACCGCGG AAGCGACGGA GCAGACGCTG 
AACGGCCGGC ACGGCATCTA CGATATTCGC GTAACGAATC GGGCGGGAGA AACCGTCGCG 
ATGTTCCGCG GCAAGTCGAC TCAAATCAAA GGGACGGTGA TCCCTGTAGA CCGTTAG 

 

Protein sequence

MAARSPERSP TATAERSAEA LARATAEAMY AADACSRSLG IEVLEVRPGY ARARMPVRGD 
FLNGHQICHG GLVFTLADST FAFACNSYNI NTVAAGCSIE FLRPVAGGDV LTAEATEQTL 
NGRHGIYDIR VTNRAGETVA MFRGKSTQIK GTVIPVDR