| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_3009 |
|---|
| Symbol | |
|---|
| ID | 4901677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | + |
|---|
| Start bp | 2946000 |
|---|
| End bp | 2947139 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640136235 |
|---|
| Product | outer membrane porin |
|---|
| Protein accession | YP_001067252 |
|---|
| Protein GI | 126454031 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.205234 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CCCTCATCGT TGCCGCTCTT TCCGGCGTTT TCGCAACGGC CGCTCACGCG
CAAAGCAGCG TGACGCTGTA CGGCCTGATC GACGCCGGCA TCACCTACAC GAACAACCAA
GGCGGCCACA GCGCATGGTC GCAATCCACC GGTTCGGTCA ACGGCAGCCG CTGGGGCCTG
CGCGGCGCCG AGGATCTCGG CGGCGGCCTG AAGGCGATTT TCGTGTTGGA AAACGGCTTC
GGCATCAATA ACGGCACGCT GAAGCAGAAC GGCCGCGAGT TCGGCCGTCA GGCGTTCGTC
GGCCTGTCGC ACGAGCAATA CGGCGCGCTG ACGCTCGGCC GTCAATACGA CAGCGTCGTC
GACTACCTCG GGCCGCTGTC GCTGACGGGC ACGCAATTCG GCGGCACGCA GTTCGCCCAC
CCGTTCGACA ACGACAACCT GAACAATTCG TTCCGGATCA ACAACGCGGT CAAGTACACG
AGCGTGAACT GGGCGGGCCT GAAATTCGGC GCGTTGTACG GCTTCTCGAA CAACAATCAG
TTCGCGAACA ACCGCGCCTA TAGCGCGGGC GTATCGTACA GCTACGCCGG CTTCAACATC
GGCGCCGGCT ACCTGCAGTT GAACAACAAC TTCGGCCCGA CGGTCTCCAA CGCATCCGGC
GCGGTCGCGC TCGACAACAC GTTCGTCGGC AAGCGCCAGC GCGTGTTCGG CGGCGGCCTG
AACTACACGT TCGGCCCGGC AACGGCCGGC TTCGTGTTCA CGCAATCGCG CGTCAACCGC
GCGACGGCAA TCGGCGCGGG CGCATCGGGC GTGTCGAGCG GCATTGCGCT CGACGGCACG
TTCATGCGCT TCAACAACTA CGAAGTGAAC GCGCGCTACG CGATCACGCC GGCATGGACG
GTGGCCGGTT CGTACACGTA CACCGCCGGC TTCATCGAGA ACCACCACCC GGGCTGGAAC
CAATTCAACC TGCAAACGGC CTACGCGCTG TCCAAGCGCA CGGACGTGTA CCTGCAAGGC
GTGTATCAGA AGGTCAACAA CGACGGCACG GGCCTCGGCG CGTACATCAA CGGTATCGGC
GGCATGTCGT CGACGGAAAA ACAGATCGCC GTCACGGCCG GCCTGCGTCA CCGCTTCTAA
|
|---|
| Protein sequence | MKKTLIVAAL SGVFATAAHA QSSVTLYGLI DAGITYTNNQ GGHSAWSQST GSVNGSRWGL
RGAEDLGGGL KAIFVLENGF GINNGTLKQN GREFGRQAFV GLSHEQYGAL TLGRQYDSVV
DYLGPLSLTG TQFGGTQFAH PFDNDNLNNS FRINNAVKYT SVNWAGLKFG ALYGFSNNNQ
FANNRAYSAG VSYSYAGFNI GAGYLQLNNN FGPTVSNASG AVALDNTFVG KRQRVFGGGL
NYTFGPATAG FVFTQSRVNR ATAIGAGASG VSSGIALDGT FMRFNNYEVN ARYAITPAWT
VAGSYTYTAG FIENHHPGWN QFNLQTAYAL SKRTDVYLQG VYQKVNNDGT GLGAYINGIG
GMSSTEKQIA VTAGLRHRF
|
|---|
| |