Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_2863 |
Symbol | rne |
ID | 4900453 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | + |
Start bp | 2815528 |
End bp | 2818794 |
Gene Length | 3267 bp |
Protein Length | 1088 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640136089 |
Product | ribonuclease E |
Protein accession | YP_001067110 |
Protein GI | 126454922 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.829315 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACGCA TGCTGTTCAA TGCGACGCAG CAGGAAGAAC TGCGCGTCGC CATCGTCGAT GGGCAGAAGC TCATCGATAT CGATATCGAA ACCGCCGGCC GCGAACAGCG CAAAGGCAAC ATCTACAAGG GCGTCGTCAC CCGCATCGAA CCGTCGCTCG AAGCCTGCTT CGTCAATTAC GGCGAAGACC GCCACGGCTT CCTGCCGTTC AAGGAAGTCG CCCGCCAGTA CTTCAAGGAA GGCGTCGACA TGCGCTCCGC GCGCATCCAG GACGCGCTGC GCGAGGGCCA GGAGCTGATC GTCCAGGTCG AGAAGGAAGA GCGCGGCAAC AAGGGCGCGG CGCTTACCAC CTTCATCTCG CTCGCCGGCC GCTACCTCGT GCTGATGCCG AACAACCCGC GCGGCGGCGG CGTGTCGCGC CGCATCGAGG GCGACGAGCG CCAGGAACTG CGCGAGACGA TGGCGCAACT GCAGATCCCC GACGGCATGA GCATGATCGC CCGCACCGCG GGCATCGGCC GCAGCGCCGA GGAACTGCAG TGGGACCTGA ACTACCTGCT GCAGCTCTGG CGCGCGATCG AGGCAGCGTC GCAAAGCGGC CACCCCGGCC AGCCGATGCT GATCTACCTC GAATCGAGCC TCGTGATCCG AGCGATCCGG GACTATTTCC AGCCGGACAT CGGCGAAATC CTGATCGACA CGACCGAGAT CCACGATCAG GCGCGCGCGT TCATGGACAT CGTGATGCCC GACAACGTCG GCAAGGTGAA GCGCTATCAC GACGACGTGC CCCTCTTCTC GCGCTTCCAG ATCGAGCACC AGATCGAAAC CGCGTACTCG CGCACGGTGC CGCTGCCGTC GGGCGGCGCG ATCGTGATCG ACCACACCGA GGCGCTCGTC GCGATCGACG TGAACTCGGC GCGCGCGACC AAGGGCGCGG ACATCGAGGA AACGGCGACC CGCACGAACC TCGAGGCGGC CGACGAAGTC GCCCGCCAGT TACGTCTGCG CGACCTGGGC GGCCTGATCG TGATCGACTT CATCGACATG GAATCGGCCA AGAGCCAGCG CGAAGTCGAG CAGCGCCTGA AGGACGCGCT CAAGCACGAC CGCGCGCGCG TGCAGATGGG CAAGATCTCG CGCTTCGGCC TGATGGAGCT GTCGCGCCAG CGCCTGCGCC CGGCCCTGTC CGAAGGCAGC CACGTCACCT GCCCGCGCTG CAACGGCACA GGCCACATCC GCGACACCGA ATCGTCCGCG CTGCAAGTGC TGCGGATCAT TCAGGAAGAA GCGATGAAGG AGAACACCGC GGCGATCCAC TGTCAGGTGC CCGTCGAGGT GACGGCCTTC CTGCTCAACG AAAAGCGCCA GGAAATCAAC AAGATCGAAT CGCGCTTCAA GGTCGGCGTC GTGCTGATTC CGAACAAGCA CCTCGATACG CCGCACTACA AGCTCGAGCG CCTGCGTCAC GACGATGCGC GCCTCGACGA TCCGCGCGCA TCATGGAAGA TGGCCGAGGA AGCCGCCCGC GAGCTCGAGG CGGAAACCGG CTACAGCAAG CGCGCCGAGG AAACGAAGCC GCGCCAGGAA GCGGCCGTCA AGGGCATCAC GCCCGAGCGG CCGGCGCCGA GCCCCGCGCC GCAGCGCCAG AGCGCGCCGG AAGCGGCGGC GCCCGTGGCC GCCGCGCCCG CGAGCGGCGG CGGTTTCATG AAATGGCTGA AGGGCCTGTT CGGCGCGCAG CCGGCTGCGG TGCCCGCACC GGCGCCCGCC GCGCAGGAAA CGGCTGCGCG TCCGGCGCGC GAGCGCGCGG AGCGTGGTGA GCGCGGCGAG AAGGCCGAGC GCGGCGAACG CGGCGGCGAT CGCAACCGCC ACCGCCGCGG CGGCGCCGCG CAGCAGGCGG GTGGACGCGA CCAGGCGGCG GCAGGCGGCG GCCGCGCTCA GGCGCCGCGC GCCGAGCGCG AAGGCAAGGA AACCCGCGAG CCGCGCGAAG GCCGCGAAGC ACGCGGCGGC CGGGACAACC GGGAAGGCCG CGAGGCGCGC GAAACCCGCG AGGCGCGCGA GCCCCGTGAA CAACGCGAGC CGCGCGAGGC ACGCGAGCAG CGCGAAGCGC GCGAGCGCGC CGAAACGGTC GACGCCGCGG AAGCCCCGCG CGGCGAGCGC CGTGAACGCG GCGAGCGCCG TAAGCCGGCC CCGCATGTCG CGACGCTCGA AACGGTGAAT CGCGGCGAAA GCGCACATGC GGAAACCGCC GAAAAGCCGC TGTACGCGCC TGGCGCGGAA GCCGGCGTCG ACGCGGATTC GAACGCACGC GACGGCGAAG AACGCCGCCG CCGCCGCCGT GGCCGCCGTG GCGGCCGCCG CGAGCGTGAA GACGAAGTCG CGGGCGCCGT GCAGGCGGCG GAAGGCAGCG AAGGCGTGAC GGCCGAGGCC GAAGCGCTCG AGCACGCCGA GCACGCGCAA CAACGCGTCG CGCCGGTAGC GAACCAAGCG CCCGAGCATG CCGCGCAAGC GGGTGCGGGC GTCGCGGCGG CAGCCGCCGC GACCGTCGCA GCCGAGGCGA TTGCGCATGT CGAGAGCGGC GCGAAGGTCG AGCCGCAACC GGCGGCCGAG GCATCCGCTG GCGATACGGA ACAGGCCGAG GCGGTGCCCG CGCGGTCCAT CGAAGCACCG GCGCAAGCGG CTTCGACGGG TCAAGCGGAA GCCGTGCAAG CCGCACCGGC CGCACCGGCA CACGTGACGC CGGCCACGGC CGACGTCGCG CGCGAGCCGG CCGCGCCTGC CGAAACTGCG TCTGCCGAAA CTACGCCTGC TGAAATCCCG CCTGCCGAAG CCGCGCCCGC CGAAGCACCG GCCGCGGAAG CGTCCGAAGT GGCCGCGAGC GCGGTCGCTT CGGCCCCGGC CCCGGCCGCG GAGCCCGCGC CGGCCGCCGA GCCGCACCGG CCGGCGCCCG TCTCGGCCGC CCCCGCCTCG GCCGCGCCGG CCGAAGCGGA CGCCGCGCGC GAGCCGGCCG CCGTCGCCGA GCCGCACGTG CCGGCGGCCG CCGCGACCCC TACCCCGGCT TCGGTGGCGA CCACGCCGGG CGCGAGCCTC GATACGGCGC TCGCGGCCGC CGGCCTTGTC TGGGTCAATA CCGACACGGA CAAGCTGCGC GCCGCACAGG CCGCCGCCGC GCAAATCGTG CAGCCCGTGC GCGTGCCGCG CGAACGCAAG CCGCTGCCGC CCGTCGACGC GACGCCGATG CAGCAGGTCG AGACGACGCA CCGCTGA
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Protein sequence | MKRMLFNATQ QEELRVAIVD GQKLIDIDIE TAGREQRKGN IYKGVVTRIE PSLEACFVNY GEDRHGFLPF KEVARQYFKE GVDMRSARIQ DALREGQELI VQVEKEERGN KGAALTTFIS LAGRYLVLMP NNPRGGGVSR RIEGDERQEL RETMAQLQIP DGMSMIARTA GIGRSAEELQ WDLNYLLQLW RAIEAASQSG HPGQPMLIYL ESSLVIRAIR DYFQPDIGEI LIDTTEIHDQ ARAFMDIVMP DNVGKVKRYH DDVPLFSRFQ IEHQIETAYS RTVPLPSGGA IVIDHTEALV AIDVNSARAT KGADIEETAT RTNLEAADEV ARQLRLRDLG GLIVIDFIDM ESAKSQREVE QRLKDALKHD RARVQMGKIS RFGLMELSRQ RLRPALSEGS HVTCPRCNGT GHIRDTESSA LQVLRIIQEE AMKENTAAIH CQVPVEVTAF LLNEKRQEIN KIESRFKVGV VLIPNKHLDT PHYKLERLRH DDARLDDPRA SWKMAEEAAR ELEAETGYSK RAEETKPRQE AAVKGITPER PAPSPAPQRQ SAPEAAAPVA AAPASGGGFM KWLKGLFGAQ PAAVPAPAPA AQETAARPAR ERAERGERGE KAERGERGGD RNRHRRGGAA QQAGGRDQAA AGGGRAQAPR AEREGKETRE PREGREARGG RDNREGREAR ETREAREPRE QREPREAREQ REARERAETV DAAEAPRGER RERGERRKPA PHVATLETVN RGESAHAETA EKPLYAPGAE AGVDADSNAR DGEERRRRRR GRRGGRRERE DEVAGAVQAA EGSEGVTAEA EALEHAEHAQ QRVAPVANQA PEHAAQAGAG VAAAAAATVA AEAIAHVESG AKVEPQPAAE ASAGDTEQAE AVPARSIEAP AQAASTGQAE AVQAAPAAPA HVTPATADVA REPAAPAETA SAETTPAEIP PAEAAPAEAP AAEASEVAAS AVASAPAPAA EPAPAAEPHR PAPVSAAPAS AAPAEADAAR EPAAVAEPHV PAAAATPTPA SVATTPGASL DTALAAAGLV WVNTDTDKLR AAQAAAAQIV QPVRVPRERK PLPPVDATPM QQVETTHR
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