Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_1816 |
Symbol | rnr |
ID | 4903180 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | + |
Start bp | 1778035 |
End bp | 1780695 |
Gene Length | 2661 bp |
Protein Length | 886 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640135046 |
Product | ribonuclease R |
Protein accession | YP_001066083 |
Protein GI | 126452178 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTGTGCTG CAAAGACCGC CATTATAGAC GGCCAAACGA ACCTGTCAAC ATTTTTTCGA GGGCCGTCCG CATCGCGGCG CGCGCGGCGC AACACGCGGC GTGCGGCCCG TTCGCCGCAG CGGCGGGTGT TAGAATGGGG CGGCATGAGC GGCGCGCCCG TTCGGCTCCG CTTGCCGCGG TCGCGCAAGC CAAACGCAAC GAGAAAAATC ATCGACAAGC CCTTGAGCAA GTATCCGTAT CCCATCCCGA GCCGCGAAGA GATTCTCGGC GTGCTGCGCA CGAGCGACGC GCCGCTTGCG GCGAACGACA TCGCCGAAGC GCTGTCGATC AAGCGTCAGG AGCGCGAAGG ATTTTTCCGG CGCGTCGCCG CGATGGAGCG CGACGGCCAG ATCCGTCTCG ACAAGCGCGG TCATTATCAG CTGACGCATC CGTCCAACTT CGTCGCGGGC CGCGTGCAAG GCCACCGCGA CGGCTACGGC TTCGTGATTC GCGACGACGG GCAGGATGAT CTGTTCCTGC CGAACGCCGA GATGCAAAAG GTCATGCACA ACGACCGCGT GCTGGCGCGG ATCGTCGGCT ACGATCGGCG CGGCCGGCCG GAAGGGCACG TCGTCGAGGT GACCGAGCGG GCGAACAAGC GCGTGATCGG GCGCCTCCTG AACGAGAACG GCGCGCTCAT CGTCGCGCCC GAGGACAAGC GGATCAGTCA CGACATCCTC GTCACGCAGA ACGCGAAGAA GGCGAAGGTC GGGCAGGTCG TCGTCGTCGA GCTCACCGAT TTCCCGAGCC GTCATTCGCA GCCGCTCGGC CGCGTCTGCG AGGTGCTCGG CGATATCGAC GATCCCGGCA TGGAGATCGA GATCGCGGTG CGCAAGTACG GCGTGCCGCA CGAATTCGGC GCGCAAGCGC TCGGCGAGGC CGCGGCGCTG CCGGACAAGG TGCGGCCCGC GGATCTGCGC TACCGCGTCG ACTTGCGCGA CGTGCCGCTC GTCACGATCG ACGGCGAGGA CGCGCGCGAC TTCGACGACG CCGTGTACTG CGAGCCCGCC GCGGTCGGCC GCGGCGAGGG CTTCCGGCTC ATCGTCGCGA TCGCGGACGT GTCGCACTAC GTGCAGCCAG GCAGCCCGCT CGACGCCGAC GCGGTCGAAC GCAGCACGTC GGTCTATTTC CCGCGCCGGG TGATTCCGAT GCTGCCGGAG AAGCTGTCGA ACGGGCTCTG CTCGCTGAAT CCGCAGGTCG ATCGCTGCGT GCTCGCGTGC GACATGATCA TCAACGCGCG TGGCGACATC AAGGCGTATC AGTTCTATCC GGCCGTGATC CACTCGGCCG CGCGGCTCAC GTACACCGAA GTGGCCGCGG TGCTCTCGAA CACGAAGGGG CCGGAGGCCG CGCGCCGCGC CGAGCTGATG CCGCACCTGC AGCACCTGTA CGGCGTCTAC AAGGCGCTCT TCGTCGCGCG GCAGAAGCGC GGCGCGATCG ACTTCGACAC GACCGAGACG TACATCGTCT GCAACGCACA GGGCAAGATC GAGCAGATTC TGCCGCGCCA GCGTAACGAC GCGCATCGGC TGATCGAGGA ATGCATGCTT GCCGCGAACG TCTGCGCGGC CGATTTCCTC AAGCGCAACA AGCACCCGGG CCTCTACCGC GTGCACGCGG GGCCGACGCC CGAAAAGCTC GAGAATCTGC GCGCGTTCCT GCGCGACATG GGGCTCACGC TGGGCGGCGG CGACACGCCG CACGCGAGCG ATTACGCGGC GCTGATGGCG CACATCCGCG ACCGGCCCGA CGCGCAGATG CTGCAGCCGA TGCTGCTGCG CTCGATGCAG CAGGCGGTCT ACAGTCCGGA CAACATCGGC CACTTCGGTC TCGCGTACGA CGCGTACGCG CACTTCACGA GCCCGATTCG CCGCTATCCC GATCTGCTCA CGCACCGCGC GATCTACGCG ATCCTGTCCG GCAAGAAGTA CACGCCGAAG TCGCCGGAAG GCGTCGAGCT GAACACCGCG CTGTCGCCGC GCGCGCGCGC GATGCAGCGC GAGGACGACG AGGCGCGCGG CCGCGCGCGG TCGAACGCGG CGATCTGGGA GGAGCTCGGG CTGCACTGTT CGTCCAACGA GCGGCGCGCG GACGAAGCGT CGCGCGACGT CGAGGCATGG CTCAAGTGCT ATTTCATGCG CGACAAGCTC GGCGAGGAAT ACGGCGGGAT GGTGAACGGC GTCACGTCGT TCGGCATCTT CGTGCAGCTC GATGCGCTTT TCATCGAAGG CCTCGTGCAT GTGACCGAGC TCGGCGCCGA TTATTTTCAG TACGACGAAG TCAAGAACGA ACTGCGCGGC GAGCGCACGG GCATTCGCTA CCGGCTGTCC GACCGCGTGC GCGTGCAGGT GAGCCGCGTC GATCTCGATG CGCGCAAGAT CGATTTCCGC CTCGTGCGCG AGACGCCCGT GAAGGCGCCG CGCCCGGCAT CGGCGGTGGC GGCCGAAGCG GGCGCGGGCG GGCCGCGCGT GCGCGCGCTG CCGCCCGCCG AAGGCGCCGC GCGACGCAAG AAGGCCGCGA GCGCGCCGAG CGCGGCGGTG AAGGAGGCCC GGGCGGCCCG CAAGAAGGGC GCCGCGTCGA AGCCGGCCGC GAAGAAGGCG CGTTCGCGCA AGAAGTACTG A
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Protein sequence | MCAAKTAIID GQTNLSTFFR GPSASRRARR NTRRAARSPQ RRVLEWGGMS GAPVRLRLPR SRKPNATRKI IDKPLSKYPY PIPSREEILG VLRTSDAPLA ANDIAEALSI KRQEREGFFR RVAAMERDGQ IRLDKRGHYQ LTHPSNFVAG RVQGHRDGYG FVIRDDGQDD LFLPNAEMQK VMHNDRVLAR IVGYDRRGRP EGHVVEVTER ANKRVIGRLL NENGALIVAP EDKRISHDIL VTQNAKKAKV GQVVVVELTD FPSRHSQPLG RVCEVLGDID DPGMEIEIAV RKYGVPHEFG AQALGEAAAL PDKVRPADLR YRVDLRDVPL VTIDGEDARD FDDAVYCEPA AVGRGEGFRL IVAIADVSHY VQPGSPLDAD AVERSTSVYF PRRVIPMLPE KLSNGLCSLN PQVDRCVLAC DMIINARGDI KAYQFYPAVI HSAARLTYTE VAAVLSNTKG PEAARRAELM PHLQHLYGVY KALFVARQKR GAIDFDTTET YIVCNAQGKI EQILPRQRND AHRLIEECML AANVCAADFL KRNKHPGLYR VHAGPTPEKL ENLRAFLRDM GLTLGGGDTP HASDYAALMA HIRDRPDAQM LQPMLLRSMQ QAVYSPDNIG HFGLAYDAYA HFTSPIRRYP DLLTHRAIYA ILSGKKYTPK SPEGVELNTA LSPRARAMQR EDDEARGRAR SNAAIWEELG LHCSSNERRA DEASRDVEAW LKCYFMRDKL GEEYGGMVNG VTSFGIFVQL DALFIEGLVH VTELGADYFQ YDEVKNELRG ERTGIRYRLS DRVRVQVSRV DLDARKIDFR LVRETPVKAP RPASAVAAEA GAGGPRVRAL PPAEGAARRK KAASAPSAAV KEARAARKKG AASKPAAKKA RSRKKY
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