| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_1253 |
|---|
| Symbol | kdpD |
|---|
| ID | 4900670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | + |
|---|
| Start bp | 1228963 |
|---|
| End bp | 1231944 |
|---|
| Gene Length | 2982 bp |
|---|
| Protein Length | 993 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640134483 |
|---|
| Product | sensor histidine kinase KdpD |
|---|
| Protein accession | YP_001065532 |
|---|
| Protein GI | 126453510 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.139979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGTC CCGATCCTGA CCAACTCCTC GACAAGATCC AGCGGGAGGA GGAAAAGCAG
CAGCGCGGCA GGCTGAAGAT CTTCTTCGGC GCGTCGGCGG GCGTCGGCAA GACCTATGCG
ATGCTGCTCG CCGCGCGCGC GCGCAAGCAG GAGGGCGTCG ACGTCGTCGT CGGCATCGTC
GAGACGCACG GGCGCAGCGA GACGGCGGCG CTGCTCGACG GGCTCGACGT GCTGCCGCTC
ATGCAGATCG AGTATCGCGG CCGCACGATC GGCGAGTTCG ATCTCGACGC GGCGCTCGCG
CGCAGGCCCC GGCTCGTCCT CGTCGACGAG CTCGCGCACT CGAACGTGCC GGGCGCGCGC
CACCTGAAGC GCTGGCAGGA TGTGTACGAG CTGCTCGACG CGGGCATCGA CGTCTACACG
AGCGTCAACG TCCAGCATCT CGAGAGCCTG AACGACGTGG TCGGCGCGAT CACGGGCATT
CGCGTGTGGG AGACCGTGCC CGACCGCGTG TTCGACGCGG CCGACGAAGT CACGCTCGTC
GATCTGCCCG CCGAGGAATT GCTGAGCCGG TTGCGCGAAG GCAAGGTCTA CATGGCGCAG
CAGGCCGAGC GGGCGGTGCG CAACTTCTTC CGCAAGGGCA ACCTGATCGC GCTGCGCGAG
CTCGCGCTGC GCCGCACGGC CGACCGCGTC GACGCGCAGA TGCGCGAGTA CCGCGCGGAC
CGCTCGATCC AGCGCATCTG GCAGGCGCGC GAGCGCCTGC TCGTGTGCGT GGGGCCGGGC
GCCGAGGCGC CGACGCTCGT GCGCGCGGCC GCGCGCCTCG CCGCGAGCCT GAAGGCCGAC
TGGCTCGCGG TGTACGTCGA GACGCCGCGG CTCGCGCGGC TGCCCGACGC GCTCCGGCAG
CGCACGCTCA ATGCACTGAA GCTCGCGGCC GAGCTCGGCG CCGAGACGGC GACGCTCACG
GGCGCGGACG CGGTCGCCGC GCTGATCGGC TACGCGCAGG TGCGCAACGC GTCGAAGATC
GTCGCGGGCG GCTCGTCGAA GACGGGCTTC CTGCGCCGCT TCTCGCGCCC GTTCGGCGAG
CAGCTCGCGG AGCGCGCGGG CGACCTCGAC CTGATGCTGA TCCGCGCGTC GGCGAGCGAG
GATGCGCGCG CGCCGCTCGA CGCGCGCGCG CGCGCGTGGC GCGACGCGTT CTCGAGCGTC
GTCGACGGCC GTTCGCCGCC GCGCCACTAC GGCTACGCGG CCGCGATCTG CGCGCTGATC
ACGGGCGCCG CGAACCTGCT GCAGGGCCAT CTCGACCTCA CGAATCTCGT GATGCTGTAC
CTGCTCGGCG TCGTGTTCTC GGCGGTGCGC CTCGGGCGTG GGCCGGGCGT CGTGCAGTCG
TTCCTGTCGG TCGCCGCGTT CGACTACTTC TTCGTGCCGC CGCGGATGTC GTTTTCCGTG
ACGGACACGC AGTATCTGCT GACCTTCTTC GGGATGTTGC TCACGTCGCT CGTGATCAGC
CATCTGACGT CGAGCCTCAC GCGCGGCGCG GCGATCGCGC AGCGCCGCGA GCGGCGCACG
AGCGCGATGT ATGCGATGGC GCGCGAGCTC GCGGCGGCGC TCACGGCCGA GCAGATCGTC
GAGATCGGCA GCCGGCACGT GTCCGAGGTG TTCCGCGCGC GCGTCGCGAT GCTGCTGCCG
GACAGCGGCG ACAAGGTCCG GCAGAAGATC GAGAACCCCG ACGAGGCGGT GACGATCACC
GGCGCGGCGC TCGATATCGA CGTCGGCCAA TGGGTGTACG ACCAGCAGAA GCCGGCCGGA
CACGGCACCG ACACGCTGCC CGCGGCCGCC GCGCTCTATC TGCCGCTGAA GGCGCCGATG
CGCACGCGCG GCGTGCTCGC CGTGGTCACG AAGGATCCGG GCGAGCTCGA GGTGCCCGAG
CAGCGGCGGA TGCTCGACGC GTTCGCCGCG CAGATCGCGC TCGCGGTCGA GCGCGTCCAC
TATGTCGAGA TCGCGCGCGA CGCGCTCGTC AACATGGAAT CGGAGCGGCT GCGCAACTCG
CTGCTGTCGG CGATCTCGCA CGATCTGCGC ACGCCGCTCA CGGCGATCGT CGGGCTGTCG
TCGATGCTCG CGAACGCGCG CGGCGCGACG CGCGAGGGCT CGCCCGCGCG CGAGGACGAG
CTCGTCGACG CGATTCACGA CGAGGCGCTC AGGATGACGG GGATCGTCAC GAACCTGCTC
GACATGGCGC GGTTGCAGGC GGGCAGCCTG CAACTGAAAC GCCAGTGGTC GCTGCTCGAG
GAGACGGTCG GCGCGGCGCT CGCCGCGTGC AAGCGCGTGC TCGCGCGCCA TCCGGCGCGC
GTGCGGCTGC CGGCCGACTT GCCGCTCCTG CAGACGGACG CGGTGCTGAT GGAGCGGCTT
TTCGCGAACC TGTTCGAGAA CGCGGCGAAG TACACGCCGC TCGACACGCC GATCGAGATC
GGCGCGGAGC GCATCGTCGA CGACGGCCGG CCGTTCGTGC GCGTGTTCGT CGACGACCAC
GGCCCCGGGC TGCCGGCCGG GATGGAGGCG CGGATCTTCG AGAAGTTCAC GCGCGGCGAG
AAGGAATCGG CGACGCCCGG CATCGGCCTC GGGCTCGCGA TCTGCCGCGC GATCGTCGAC
GCGCACGGCG GTAAAATCGG TGCGCTCAAC CGGCTCGGGC CGGATGGCCG GGTCGAGGGC
GCGCGTTTCT GGTTCACGCT GCCCGTCGAC ACGCCGCCGC CCGAGCCCGG CGCCGGCGAC
GAGGCGCCGG ATGACGACGC GGGCGCGGCG GCGGACGCGA GCGGCATGCG TGATGCGGGG
CGCGCGGCCG GCAGGCGCAT CGCCGGCGAG CGCGTCGCCG GCGAGCGTGC GTTCGCCGCG
GCGGCTCGCC CGGTGCCCGG CCAGGCCGCC GCGGCGGACG CGCCGCGCCG CGACGGCGGT
GCGCCGCCGC TATCCAACGA ACCACCGCAT GCCCATGAGT GA
|
|---|
| Protein sequence | MNRPDPDQLL DKIQREEEKQ QRGRLKIFFG ASAGVGKTYA MLLAARARKQ EGVDVVVGIV
ETHGRSETAA LLDGLDVLPL MQIEYRGRTI GEFDLDAALA RRPRLVLVDE LAHSNVPGAR
HLKRWQDVYE LLDAGIDVYT SVNVQHLESL NDVVGAITGI RVWETVPDRV FDAADEVTLV
DLPAEELLSR LREGKVYMAQ QAERAVRNFF RKGNLIALRE LALRRTADRV DAQMREYRAD
RSIQRIWQAR ERLLVCVGPG AEAPTLVRAA ARLAASLKAD WLAVYVETPR LARLPDALRQ
RTLNALKLAA ELGAETATLT GADAVAALIG YAQVRNASKI VAGGSSKTGF LRRFSRPFGE
QLAERAGDLD LMLIRASASE DARAPLDARA RAWRDAFSSV VDGRSPPRHY GYAAAICALI
TGAANLLQGH LDLTNLVMLY LLGVVFSAVR LGRGPGVVQS FLSVAAFDYF FVPPRMSFSV
TDTQYLLTFF GMLLTSLVIS HLTSSLTRGA AIAQRRERRT SAMYAMAREL AAALTAEQIV
EIGSRHVSEV FRARVAMLLP DSGDKVRQKI ENPDEAVTIT GAALDIDVGQ WVYDQQKPAG
HGTDTLPAAA ALYLPLKAPM RTRGVLAVVT KDPGELEVPE QRRMLDAFAA QIALAVERVH
YVEIARDALV NMESERLRNS LLSAISHDLR TPLTAIVGLS SMLANARGAT REGSPAREDE
LVDAIHDEAL RMTGIVTNLL DMARLQAGSL QLKRQWSLLE ETVGAALAAC KRVLARHPAR
VRLPADLPLL QTDAVLMERL FANLFENAAK YTPLDTPIEI GAERIVDDGR PFVRVFVDDH
GPGLPAGMEA RIFEKFTRGE KESATPGIGL GLAICRAIVD AHGGKIGALN RLGPDGRVEG
ARFWFTLPVD TPPPEPGAGD EAPDDDAGAA ADASGMRDAG RAAGRRIAGE RVAGERAFAA
AARPVPGQAA AADAPRRDGG APPLSNEPPH AHE
|
|---|
| |