Gene BURPS1106A_0159 details

Gene Information

• Locus tag: BURPS1106A_0159
• Symbol: def
• ID: 4899509
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1106a
• Kingdom: Bacteria
• Replicon accession: NC_009076
• Strand: +
• Start bp: 151300
• End bp: 151839
• Gene Length: 540 bp
• Protein Length: 179 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 640133389
• Product: polypeptide deformylase
• Protein accession: YP_001064443
• Protein GI: 126453149
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.407364
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGAGCGG GTCGTTCGTC TCCCGACACT GAAATCATGG CTTTGCTGAA CATTCTTCAC 
TACCCCGATA AACGGCTGCA CAAGGTGGCC AAGCCGGTCG CCAAAGTGGA CGACCGCATT 
CGCAAGCTCG TCGCCGACAT GGCCGAGACG ATGTACGCGG CGCCCGGCAT CGGCCTTGCT 
GCGACGCAGG TCGACGTGCA TGAACGCGTG ATCGTGATCG ACGTGTCCGA GGACAAGAAC 
GAGCTGCGCG TCTTCATCAA CCCGGAAATC GTCTGGACGG GCGACGGCAA GCAGGTCTAT 
GAGGAAGGCT GCCTGTCGGT GCCGGGTGTC TATGACGAAG TGGAGCGCCC GGACCGGGTG 
CGCGTGCGCG CGCTCGACGG CCAAGGCGAG CCGTTCGAGC TCGATTGCGA AGGGCTGCTC 
GCGGTGTGCA TCCAGCACGA GATGGATCAC CTGATGGGTC GCGTGTTCGT CCAGTATCTG 
TCGCCGCTCA AGCAGACCCG GATCAAGACG AAGATGAAGA AACTCGAACG CGCAATGTGA 

 

Protein sequence

MRAGRSSPDT EIMALLNILH YPDKRLHKVA KPVAKVDDRI RKLVADMAET MYAAPGIGLA 
ATQVDVHERV IVIDVSEDKN ELRVFINPEI VWTGDGKQVY EEGCLSVPGV YDEVERPDRV 
RVRALDGQGE PFELDCEGLL AVCIQHEMDH LMGRVFVQYL SPLKQTRIKT KMKKLERAM