Gene BURPS668_A1392 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS668_A1392 
Symbol 
ID4886070 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 668 
KingdomBacteria 
Replicon accessionNC_009075 
Strand
Start bp1302720 
End bp1304321 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content66% 
IMG OID640131331 
ProductABC transporter, periplasmic substrate-binding protein 
Protein accessionYP_001062389 
Protein GI126443253 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.00928392 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACTCT CGATGCCCAA GCTCGTCGCG GCGCTCGCCG CCGCTTCCGC GTTCGCGGCC 
GTCCCGGCCC GCGAAGCGCA CGCGGCGCCG CCGAAAGACC TGTTCGTGAT GGCCACGCTG
CTCGACGAGT TCATCTCGCT CGATCCGGGT GAAATCTACG AGCTCGTGCC GGAGGAATAC
GTCGCGAATA CATACGACCG GCTGGTGCGC GTCGATCTCG CCGATCCGTC GAAATTCAAC
GGCGACGTCG CGCAATCGTG GAGCGTGAGC CCCGACGGCC TCACGTTCAC GTTCAAGCTG
CGCGCGGGCC TCGCGTTCCA TTCGGGCAAT CCGCTCACGG CCGACGACGT CGCGTGGTCG
CTCCAGCGCG CGGCGCTGCT CGACAAGGGG CCGGCCGCGG TGCTCGCGGG CATCGGCCTC
ACGAAGGCAA ACGCGCTCGC GAACGTGAAG CAGCTCGACG CGCTGACGGT ATCCGTCACG
ACCGACCGCA AGTACGCGCC GAGCTTCGTG CTGAACGTGC TCGGCTCGTG GCCCGCGTCG
ATCGTCGACA AGAAGCTGCT GCTGTCGCAC CAGCAGGGCG ACGATTTCGG CAATGGCTGG
CTGAAGACGC ACGAGGCCGG CTCGGGCGCC TACCAGCTCG TCAAGTGGAC GGCGGGCGAC
AGCATCGTGC TGCAGCGCTA CGACCGCTAC CGGCTGCCGC TCGCGATGAA GCGGATCGTG
CTGCGCCACG TGCCCGAGGC GGCGAGCCAG CGGCTGCTGC TCGAAAGCGG CGATGTCGAC
GCGGCGCGCG ACCTGAGCCC CGACGATCTC GCGGCCGTCG CGAACAGCGG CAAGGCGAAG
GTGACGCCGT CGCCGCAGGC GACGCTGCTG TACCTCGGCC TCAACACGAA GAACCCGACG
CTCGCGAAAC CGGAGGTTCA GCAGGCGCTG AAATGGCTCG TCGATTACGA CGGCATCCAG
CGCCACGTCG TGAAAACGAC CTACCAGGTC CATCAGACGT TCATGCCGGA GGGCTTGCTC
GGCGCGCTGA ACGCGAATCC GTACCGGCTC GACGTCGCGA AGGCGAAGGC GCTGCTCGCG
AAGGCCGGCG TGCCGAACGG CTTCACGGTG ACGATGGACG TGCGCAACGA CTACCCGTAC
ACCGAGATCG CGCAGGCGGT GCAGGCGAAC TTCGCGCAGG CGGGCGTCAA GGTGCAGCTG
ATTCCCGGCG ACAACAAGCA GACGCTCGCG AAGTACCGTG CGCGCCAGCA CGACATCTAC
ATCGGCGAAT GGTCGGCCGA TTACATCGAT CCGCACAGCA ATGCGCAGGG CTTCGCATGG
AACCCGGATA ATTCGGATCA GTCCAGCTAC AAGATGCTCG CGTGGCGCAA CGCCTGGAAC
ATCCCGCGAC TGACCGCGCA AACGGACGCG GCGCTCGCGG AGCCTTCCGC CGCGAAGCGC
GCGCAGTCAT ATCAGGCGAT GCAAAAGGAA GTGCTCGCGA AATCGCCGTT CGTGATCCTG
TTCGAGAAAG TCGCGCAGGT CGCGACGCGG CCCGGCGTGA GCGGCCTCGA AGTCGGCCCG
ATCAACGATC TCGTTTCATA TCGCAATCTG AAGAAGCAGT GA
 
Protein sequence
MTLSMPKLVA ALAAASAFAA VPAREAHAAP PKDLFVMATL LDEFISLDPG EIYELVPEEY 
VANTYDRLVR VDLADPSKFN GDVAQSWSVS PDGLTFTFKL RAGLAFHSGN PLTADDVAWS
LQRAALLDKG PAAVLAGIGL TKANALANVK QLDALTVSVT TDRKYAPSFV LNVLGSWPAS
IVDKKLLLSH QQGDDFGNGW LKTHEAGSGA YQLVKWTAGD SIVLQRYDRY RLPLAMKRIV
LRHVPEAASQ RLLLESGDVD AARDLSPDDL AAVANSGKAK VTPSPQATLL YLGLNTKNPT
LAKPEVQQAL KWLVDYDGIQ RHVVKTTYQV HQTFMPEGLL GALNANPYRL DVAKAKALLA
KAGVPNGFTV TMDVRNDYPY TEIAQAVQAN FAQAGVKVQL IPGDNKQTLA KYRARQHDIY
IGEWSADYID PHSNAQGFAW NPDNSDQSSY KMLAWRNAWN IPRLTAQTDA ALAEPSAAKR
AQSYQAMQKE VLAKSPFVIL FEKVAQVATR PGVSGLEVGP INDLVSYRNL KKQ