| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_1507 |
|---|
| Symbol | |
|---|
| ID | 4884017 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | - |
|---|
| Start bp | 1469290 |
|---|
| End bp | 1470681 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640127435 |
|---|
| Product | DNA-damage-inducible protein F |
|---|
| Protein accession | YP_001058549 |
|---|
| Protein GI | 126438800 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.208132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCT CCTCCCCTCC GACGCACGCA GACGAAGACC CCGAGCCGCG CACTGCCGCG
AACGGGCATC GGCGCGTGCT CGGCCTCGCG TTGCCCATCA TCGCGGCCAA TCTCACGCAG
CCGATTCTCG GCGCGGTCGA CACCGCCGTC GCCGGTCACC TGAACGGCCC GCAATATCTC
GGCGGCGTCG CACTCGGCGG CCTCTTCTTC AATTTCGTGT ACTGGGGCTT CGGCTTCCTG
CGAATGGGGA CGACGGGGCT CGTCGCGCAA GCGTTCGGCG CGAACGACCT CGCCGGAATC
CGCATCAACG TACTGCGCGC GCTCCTGCTC GCGTTCACGC TCGGCGCGGC GGTGCTCGCG
CTGCAAACGC CGCTGCTCGG CATCGCGTTC GCCGCGCTCG GCGGCAGCGA TTCGGTTCGC
TCGACTGCGC TCGAATACGC GCACGCGCGG ATCTGGGCCG CGCCGTTCGC GCTCGCGAAT
TACGTCGTGC TCGGCTATCT GCTCGGCATG CAACGCGTGC GTCTCGCACT CGTGATCCAG
GTGCTCGTGA ACGTCGTCAA CATCGGCGCG GTGCTGCTCT ACGTGTACCG CTTCGATTGG
GGCGTCGCAG GCATCGGCGC CGCGACCGCG ACGGCCGACA TCGCCGGCTT CGCGGCGAGC
GCGCTGCTGC TGCGCTGGCT GAACCCGCGC GGCCTCGCGA AGATCAGGCG CGTCGAGCTC
TTCGATCGCG CGGCGCTCGC ACGTCTCGTC ACGCTCAATC GCGACATCTT CATCCGCACG
CTGTGTCTGC TGTCGGCGTT CGGCTGGTTC GCGCATCTCG GTGCGCGCCA AGGCGACGCG
ACGCTCGCCG CCAACGCGCT GCTGCTCAAT TTCCAGACCT TCATGGCGTA CGCGCTCGAC
GGCTTCGCGC ATGCGGCGGA AGCGCTTGTC GGCGCGGCGG CCGGCGCGCG CAATCGCGAT
GCATTCCGCC AAGCGCTGCG CACGACGTTC TTCTGGGCGG GGATCGGCGC GCTCGCGTTC
GCGCTCGCCT ATTGGTGCGC GGGCGGCTGG ATCGTCGCGC AACTCACCGA TCAGCCGTCC
GTGCGGGGCG TCGCCGAACG TTATCTCCCG TGGGCCGCGC TCTCACCGGT GATTTCCGTC
TGGGGTTTCA TGCTCGACGG CGTGTTCATC GGCGCGACGC ACACGCGCGC GCTGATGCGG
GCCATGGCGA CATCGTTCGC GCTGTTCGTC GCCGCAACGC TCGCGCTGGT CGGTCCGCTC
GGCAATCACG GGCTCTGGAT CGCATTGCTC GTGTTCATGG CCGCGCGCGG CGCGACGCTC
GCGCGCCGTC TGCCGGGGCT CGAGCGAGCC GTCGCACCGG ATGCGGCGCG AGCGCCGAGC
GCGGCAGGCT GA
|
|---|
| Protein sequence | MSASSPPTHA DEDPEPRTAA NGHRRVLGLA LPIIAANLTQ PILGAVDTAV AGHLNGPQYL
GGVALGGLFF NFVYWGFGFL RMGTTGLVAQ AFGANDLAGI RINVLRALLL AFTLGAAVLA
LQTPLLGIAF AALGGSDSVR STALEYAHAR IWAAPFALAN YVVLGYLLGM QRVRLALVIQ
VLVNVVNIGA VLLYVYRFDW GVAGIGAATA TADIAGFAAS ALLLRWLNPR GLAKIRRVEL
FDRAALARLV TLNRDIFIRT LCLLSAFGWF AHLGARQGDA TLAANALLLN FQTFMAYALD
GFAHAAEALV GAAAGARNRD AFRQALRTTF FWAGIGALAF ALAYWCAGGW IVAQLTDQPS
VRGVAERYLP WAALSPVISV WGFMLDGVFI GATHTRALMR AMATSFALFV AATLALVGPL
GNHGLWIALL VFMAARGATL ARRLPGLERA VAPDAARAPS AAG
|
|---|
| |