| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_1062 |
|---|
| Symbol | |
|---|
| ID | 4883189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | - |
|---|
| Start bp | 1038324 |
|---|
| End bp | 1040624 |
|---|
| Gene Length | 2301 bp |
|---|
| Protein Length | 766 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640126990 |
|---|
| Product | P pilus assembly protein, porin PapC |
|---|
| Protein accession | YP_001058112 |
|---|
| Protein GI | 126442012 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.819207 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGCCG AGGCGGCCGC GCCGCCCGCG CGGTCCGCAT TGCCCGGGCC GACGACGAGC
CTGCCGGTGC CGGGCGCCGA CGCGACCGTC CCCGCGAGCG ACCTGTATCT CGGCGTCTCG
CTGAACGGCC AGCCGACGCG CCTGATCGTG CACTTCGTCG TCGCCGACGG GCGCTTCTAC
GCGAGCCAGG ACGATCTGAA CGACATCGGC GTCGCGACGT CGCGGCTGCG ACAGCCGGCG
AACGCGCTCA TCGCGCTCGA TGCGCTCGAC GGCCTGCGCT ACCGCTACGA CGCCGCGCGC
CAGACGATCG ATCTCGACGC GCCCGATTCG CTGCGCATCC CGCACACGTT CGACACACGC
GCGCTCGCGC CGACGGTCCC CGCGAGCGCG GGCCGCGGCG TCGTGCTGAA TTACGACCTC
TATGCGCAGA CGGCCGATCG CGCGAGCGCG GCGCTCTGGC ACGAGGCGCG CTACTTCGAT
CCGGCCGGCG TCTTCAGCAG CACGGGCGTC GCGTATTTTC AGCACGGCGG CCAGCGCTAC
ACGCGCTACG ACACCTCGTG GAGCATGTCC GATCCGAAAT CGCTGACGAC GACGCAGTTC
GGCGACACGA TCTCGTCGTC GCTCGCCTGG ACGCGCTCGC TGCGCGTCGC CGGCCTGCAA
TGGCGCAGCA ACTTCGCGCT GCGCCCGGAC CTCGTGACGT TCCCGGTGCC GGCGCTCGCG
GGCACGGCCG TCGTGCCGTC GACCGTCGAT CTGTACGTGA ACGGCGTGCG CCAGTTCAGC
GGCGACGTGC CGAGCGGCCC GTTCGTCATC AACAGCGTGC CGGGCATCAC GGGCGCGGGC
AACGCGACCG TGGTCACGCG CGACGCGCTC GGGCGCACGA TCGCGACGTC GCTGCCGCTC
TACATCGACA CGCGGATGCT CGCGCCCGGC CTCGCGAGCT ATTCGGTCGA GGCGGGTTTC
CTGCGCCGCG CGTGGGGGCT GCGCTCGTTC GACTACGCGC CCCGCCCGGC CGTGAGCGCG
ACCGCGCGCT ACGGCGTGAG CGAGCGCCTG ACCGTCGAGG CGCACGCGGA GGCGACGCCC
GGCCTCTACA ACGCGGGCGC GGGCGCGCTC GTGCGGCTCG GCGGCGCGGG GGTCGCGAGC
GCGTCGGCCG CGCAAAGCGC CGGGCGCCTC GCGGGCACGC AGGCCGGCCT CGGCTACCAG
CTCGTGCTGC CGCGCTTTTC GATCGACGCG CAAACGCTGC GCGCGTTCGG CCAATACGGC
GACCTCGCCG CGCGCGACGG CACGCCGGTG GCGAGCGCGA CCGATCGCGT CACGCTGTCG
CTGCCGTTCA TCCGCTCGCA GACGTTCGCG ATCAGCTACA TCGGCCTCAG GTATCCGGGC
CTGCAAACCG CGCGGATCGG CTCCGTGTCG TACTCGGTCA ACGTCGGCAA CCTTGCGTCG
ATCAACGTCA GCGCGTTCCA GGACTTCCAC CAGCACGACT CGCGCGGCGT GTTCGTGAGC
CTGAACGTCG CGCTCGGCAA CCGGACGTCG GTCAACGCGA ACGTCGGCCG GCAGAACGGC
AAGACCGTCT ACAACGTGAA CGCGATGCGC GCGCCCGACT ACGGCGGCGG CTTCGGCTGG
AGCGCGCAGA CGGGCGACGC GGGCGGCGTG CGCTACGGCC AGGCGCAGGC GCGATATCTC
GGCCGCTCGG GCGAGGTGGC GGCGCTCGCG CAGACGATCG CCGGACATCA GAACGCGGCG
CTCGACGTGG CGGGCGCCGT CGTGCTGATG GACGGCCGCG CGCTGCTCAC GCGGCGCATC
GACGACGGCT TCGCGCTCGT GTCGACCGAC GCTTCGCCGG GCGTGCCGGT GCTGCACGAG
AATCGCCTGA TCGGCACGAC CGACCGCAAC GGCTACCTGC TGATTCCGGA TCTGAACGCG
TACCAGAACA ACCGGATCGG CATCGACACG TTGAAGCTGC CGCTCGACGC GCGCGTATCC
GACACGATTC GCAACGTCGT TCCGCAGTCG CGCTCGGGCG TGCTCGCGCA TTTCGCGATC
GCGCGCGAAC AGTCGGCGTC GATCGTCCTC GAGGATGCGT CCGGCGCGCC GCTGCCGGCC
GGGCTGTCGG TCTCGCATCG CGAGAGCGGC GCGAGCACGA TCGTCGGCTA CGACGGGCTC
ACGTTCGTCA CGGGCCTCGC GGCCGCCAAT CACCTGGAGA TCACGGGCCA CGGCAAGCGC
TGCGCGGTCG CGTTCGACTA TGCGCGCCCG GCCGACGGCA CGCCGCCGAC GATCGGGCCG
CTCGTCTGCG ACCTGAAGTA A
|
|---|
| Protein sequence | MLAEAAAPPA RSALPGPTTS LPVPGADATV PASDLYLGVS LNGQPTRLIV HFVVADGRFY
ASQDDLNDIG VATSRLRQPA NALIALDALD GLRYRYDAAR QTIDLDAPDS LRIPHTFDTR
ALAPTVPASA GRGVVLNYDL YAQTADRASA ALWHEARYFD PAGVFSSTGV AYFQHGGQRY
TRYDTSWSMS DPKSLTTTQF GDTISSSLAW TRSLRVAGLQ WRSNFALRPD LVTFPVPALA
GTAVVPSTVD LYVNGVRQFS GDVPSGPFVI NSVPGITGAG NATVVTRDAL GRTIATSLPL
YIDTRMLAPG LASYSVEAGF LRRAWGLRSF DYAPRPAVSA TARYGVSERL TVEAHAEATP
GLYNAGAGAL VRLGGAGVAS ASAAQSAGRL AGTQAGLGYQ LVLPRFSIDA QTLRAFGQYG
DLAARDGTPV ASATDRVTLS LPFIRSQTFA ISYIGLRYPG LQTARIGSVS YSVNVGNLAS
INVSAFQDFH QHDSRGVFVS LNVALGNRTS VNANVGRQNG KTVYNVNAMR APDYGGGFGW
SAQTGDAGGV RYGQAQARYL GRSGEVAALA QTIAGHQNAA LDVAGAVVLM DGRALLTRRI
DDGFALVSTD ASPGVPVLHE NRLIGTTDRN GYLLIPDLNA YQNNRIGIDT LKLPLDARVS
DTIRNVVPQS RSGVLAHFAI AREQSASIVL EDASGAPLPA GLSVSHRESG ASTIVGYDGL
TFVTGLAAAN HLEITGHGKR CAVAFDYARP ADGTPPTIGP LVCDLK
|
|---|
| |