| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS668_0009 |
|---|
| Symbol | gspF |
|---|
| ID | 4884293 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 668 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009074 |
|---|
| Strand | + |
|---|
| Start bp | 12154 |
|---|
| End bp | 13371 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640125937 |
|---|
| Product | general secretion pathway protein F |
|---|
| Protein accession | YP_001057064 |
|---|
| Protein GI | 126441326 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCT TCCGTTTCGA AGCGATCGAC GCGTCGGGGC GCGCGCAAAA GGGCGTGATC
GAAGCCGACA GCGCGCGCAA CGCGCGCGGC CAGCTGCGCA CGCAGGGCTT GACGCCGCTC
GTCGTCGAGC CGGCCGCGAG CGCGCAGCGC GGCGCGCGCA GCCAGCGCCT CGCGCTCGGC
CGCAAGCTGT CGCAGCGCGA GCAGGCGATC CTCACGCGCC AGCTCGCGAG CCTGCTCGTC
GCCGGGCTGC CGCTCGACGA GGCGCTCGCG GTGCTGACCG AGCAGGCCGA GCGCGATTAC
ATCCGCGAGC TGATGGCCGC GATCCGCGCG GAAGTGCTCG GCGGCCATTC GCTCGCGAAC
GCGCTCACGC AGCATCCGCG CGATTTTCCG GAGATCTACC GCGCGCTCGT CGCGGCGGGC
GAGCACACCG GCAAGCTCGG CATCGTGCTG TCGCGGCTCG CCGACTACAT CGAGGAGCGC
AACGCACTCA AGCAGAAAAT CCTGCTCGCG TTCACGTATC CGGCGATCGT CACGGTGATC
GCGTTCGGCA TCGTTACGTT CCTGCTGAGC TACGTGGTGC CGCAGGTCGT CAACGTGTTC
GCGAGCACGA AACAGCAGTT GCCGGTGCTC ACGATCGTGA TGATGGCGCT GTCCGATTTC
GTCAGACACT GGTGGTGGGC GATCCTGATC GGGATCGCGG CCGTCGTCTA TCTGGTGAAG
GCGACGCTCT CGCGCGACGG CCCGCGCCTC GCGTTCGACC GCTGGCTTTT GACTGCCCCG
CTCGCGGGCA AGCTCGTGCG CGGCTACAAC ACGGTGCGCT TCGCGAGCAC GCTCGGCATC
CTGACCGCGG CGGGCGTGCC GATCCTGCGC GCGCTGCAGG CGGCGGGCGA GACGCTGTCG
AACCGCGCGA TGCGCGGCAA CATCGAGGAC GCGATCGTGC GCGTGCGCGA AGGCTCGGCG
CTCTCGCGCG CGCTCAACAA CGTGAAGACG TTTCCGCCCG TGCTCGTGCA CCTGATCCGC
TCGGGCGAGG CCACGGGCGA CGTGACGACG ATGCTCGACC GCGCGGCCGA AGGCGAATCG
CGCGAGCTCG AGCGGCGCAC GATGTTCCTC ACGAGCCTGC TCGAGCCGCT GCTGATTCTC
GCGATGGGCG GCATCGTGCT CGTGATCGTG CTGGCGGTGA TGCTGCCGAT CATCGAGCTG
AACAACATGG TGCAGTGA
|
|---|
| Protein sequence | MPAFRFEAID ASGRAQKGVI EADSARNARG QLRTQGLTPL VVEPAASAQR GARSQRLALG
RKLSQREQAI LTRQLASLLV AGLPLDEALA VLTEQAERDY IRELMAAIRA EVLGGHSLAN
ALTQHPRDFP EIYRALVAAG EHTGKLGIVL SRLADYIEER NALKQKILLA FTYPAIVTVI
AFGIVTFLLS YVVPQVVNVF ASTKQQLPVL TIVMMALSDF VRHWWWAILI GIAAVVYLVK
ATLSRDGPRL AFDRWLLTAP LAGKLVRGYN TVRFASTLGI LTAAGVPILR ALQAAGETLS
NRAMRGNIED AIVRVREGSA LSRALNNVKT FPPVLVHLIR SGEATGDVTT MLDRAAEGES
RELERRTMFL TSLLEPLLIL AMGGIVLVIV LAVMLPIIEL NNMVQ
|
|---|
| |