Gene Pcal_2174 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2174 
Symbol 
ID4909388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp2008630 
End bp2009292 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content41% 
IMG OID640125928 
ProductRecB family-like endonuclease 
Protein accessionYP_001057055 
Protein GI126460777 
COG category[L] Replication, recombination and repair 
COG ID[COG4998] Predicted endonuclease (RecB family) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGCCA GATTTGAAAA ACACGTGCTT GATATTTTAC CAGCGCTTGG TCTACAGCCC 
AGGGCCCTAC GGTATAAAGT CTACAGAAAC GGTGTCGAAG TAGGCGAGGT GGACATACTC 
GCAGTTGATG AAAAAGGTGA CGTTTACGCT ATAGAGGTTA AGGCTGGAAA GGTGGACATA 
AGTGGAATAA GGCAAGCCTT CGTAAACGCC AAGCTACTAG GCGCAAAGCC GTTGATAATA 
GCAAGAGGTT ATGCTGACGA AGGCGCATAT GAGCTCGCCA AGGAGTTAGG CGTAGAGGTA 
GTCCTACTTC CCGACTACAT ATTTCTCTCT TTAGACGACT TATACACAGC TTTTGTAAAT 
GCCTTTGCTA GATTTTTTGC AACACTATTG GAGGCATTTA TCACCCTCAC AGAGGAAGAA 
GCACAAGTAA TCGAACATTG CCAAGATCTA CAATGTATAT GTCAACAAAT AGATTGTAAT 
ACTTTATTTA AAAAACTTCC TCGTGAGGCA AAAAATTATG AGATACTATC TGCAGCTGTA 
AAAATAAGGA AAATTTTATC AACAGTAGTG AATCAAGTAG CTAAGTTTAA TACCAGTGGC 
TTAAGTAGCG TGCATGGAGA AGTTGGTACA AGAACTGAAG GAGAAACTTC GCCCAAAAAT 
TAG
 
Protein sequence
MGARFEKHVL DILPALGLQP RALRYKVYRN GVEVGEVDIL AVDEKGDVYA IEVKAGKVDI 
SGIRQAFVNA KLLGAKPLII ARGYADEGAY ELAKELGVEV VLLPDYIFLS LDDLYTAFVN 
AFARFFATLL EAFITLTEEE AQVIEHCQDL QCICQQIDCN TLFKKLPREA KNYEILSAAV 
KIRKILSTVV NQVAKFNTSG LSSVHGEVGT RTEGETSPKN