| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2147 |
|---|
| Symbol | |
|---|
| ID | 4909133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1984995 |
|---|
| End bp | 1985507 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640125901 |
|---|
| Product | transcription factor IIE (TFIIE), alpha subunit |
|---|
| Protein accession | YP_001057028 |
|---|
| Protein GI | 126460750 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1675] Transcription initiation factor IIE, alpha subunit |
|---|
| TIGRFAM ID | [TIGR00373] conserved hypothetical protein TIGR00373 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGACG TGTATCTTTA CATAGTTGAA AAAAGCGTAG CGCTTGAGTT CGACTCAGCC
GAATACGGCA GATTGGCGAG GAAGACCGTG GAGCTCCTCT ATGATAGGAA GGAGGAGCTC
ACCGACGACC GAATCGCAAT CCTCCTCAAC ATTTCAACAG CCGAGACGAG GAGAATCCTA
CAGTACTTAA TGAAGCAGAA CTTAGTCGGC GTGAAGAAGA GGAGCACAGA GGACTATAGG
ATCGAGTATA CGTGGTATGT AAACGACGAG GTGATATCTC AAGCAGTTAA GTATAGGGCG
AAGGTCGTGA GAGAAAAAAT TTCGCTTATG ATAAAGGCTT TGACAGAGGA GGCCTTCTAC
GTCTGTCCAA ACTGCTTCAT GCGGTACCCC GTCGAAGAGG TCATGGAACG GGGAGGAGTG
TGCCCAATAT GCGGCTCACA TCTCGAGTAC GTGGAAAACG TAGAGGAGAT AAATAAGCTC
ACCAAAGTCT TTGAAAAACT AGACAAGATA TGA
|
|---|
| Protein sequence | MKDVYLYIVE KSVALEFDSA EYGRLARKTV ELLYDRKEEL TDDRIAILLN ISTAETRRIL
QYLMKQNLVG VKKRSTEDYR IEYTWYVNDE VISQAVKYRA KVVREKISLM IKALTEEAFY
VCPNCFMRYP VEEVMERGGV CPICGSHLEY VENVEEINKL TKVFEKLDKI
|
|---|
| |