| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2115 |
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| Symbol | |
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| ID | 4909382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1958296 |
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| End bp | 1960491 |
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| Gene Length | 2196 bp |
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| Protein Length | 731 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 640125869 |
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| Product | AAA family ATPase, CDC48 subfamily protein |
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| Protein accession | YP_001056996 |
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| Protein GI | 126460718 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | [TIGR01242] 26S proteasome subunit P45 family
[TIGR01243] AAA family ATPase, CDC48 subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGTGAGT GGATTGAATT AAGAGTTCTC GAGAGCAAGG CACGGGACGC TAATCGTCCA
GTGGTGAGGA TAGACCCCGA GGTTATGGAG AGGGCGGGGA TAATGGTGGG CGACGTGGTT
GAAATCGTTG GGAGGAGGAG GACTGCCGCT AAGGTGTGGA ACGGCCTTCC CGAGGATAGG
GGCAAGGGCG TAATTAGGAT GAACAGCATA CTTAGGAAGA ACGCCGACGT GGCTCTCAAC
GAGACTGTAA GAGTGAGAAG GGTCGAGCCA AAGCCCGCGG CGTTTGTAAA GCTTGCACCC
GTGTCTATGA CCATCGCCGT TGATGCAAAC TTCCTGCAGT ACATTAAGCA GAGGTTGAGG
GAGTACGTGG TAGTTGAGGG CGACATGTTG CAAATCCACG TGCTTAGCCA GCCTCTCACA
TTCCAAGTAA TTCAGACCAA GCCCTCCAAC TCCATTGTCA TAATAAACGA CGACACGCAG
ATTCAGATAT TTGAAAAACC GGTGTCAGGC GTCAAGATCC CGCACGTGAC TTGGGAGGAC
ATCGGCGATT TGGAGGATGC TAAGCAGAAG ATTAGGGAGC TTGTGGAGCT TCCTCTTCGG
CATCCTGAGC TTTTTAAGCA CTTGGGCATA GAGCCGCCTA AGGGCATTCT GCTTATTGGG
CCTCCTGGCA CTGGGAAGAC GCTTTTGGCC AAGGCCGTGG CCAACGAGGC TAACGCCTAC
TTCGTGGCCA TTAACGGGCC TGAGATCATG TCTAAGTACT ACGGCGAGTC TGAGGCTAGG
CTGAGAGAGA TATTTGAGGA GGCTAAGAAG AACGCCCCCG CAATCATCTT CATAGACGAG
ATCGACGCCA TAGCGCCCAA GAGAGAGGAG GTGACCGGCG AAGTGGAGAA GAGAGTAGTG
GCACAGCTCC TCACCCTAAT GGACGGACTA CAAGAAAGAG GACAGGTAAT AGTCATAGGA
GCCACAAACC GCCCAGACGC AGTAGACCCA GCGTTGAGAA GGCCGGGAAG ATTCGACAGA
GAGATCTGGA TTAATCCTCC CGACTTCAAG GGCCGGTATG AGATACTTGT TATACATACC
CGGAACATGC CTCTGGGGCC CGACGTCGAT TTGAGAAAAC TCGCCGAGAT TACACACGGC
TTCACTGGGG CCGACTTAGC CGCCTTGGCG AGGGAGGCGG CTATGAGCGC GTTGAGGAGG
GCTATTCAGA GCGGGCTTAT TGACCTGAAC CAACCCTCTA TACCCCCCGA GGTGTTTGAG
AAAATCAAGG TCACAATGGC CGACTTCATG GGCGCGTTGC GGGAGATTAT CCCCTCTGCC
CTCAGAGAGG TGCACATAGA GGTGCCGCGG GTCCGCTGGG ACGACATAGG GGGCCTTGAA
AATGTAAAAC AGGAGCTGAG GGAGGCCGTG GAGTGGCCTC TTAAGTACCC CGACCGCTTT
AAGAAGTTCG GCCTGAGGGC CCCCAAGGGC ATACTGTTGT TCGGCCCGCC AGGCACTGGG
AAGACGCTTT TAGCCAAGGC CGTTGCCACC GAGTCTGGGG CCAACTTCGT GGCAGTTAGG
GGGCCGGAGA TCTTCTCCAA GTGGGTGGGC GAGTCTGAGA AAATGGTCAG AGAGATCTTT
AGAAAGGCCC GTATGGCGGC TCCGGCCGTT ATATTCATAG ACGAGATTGA TGCGCTGGCC
ACGGCTAGGG GGCTTGGCGG GGACTCTCTC GTAAGTGAGC GGGTTGTTGC ACAACTCTTG
GCAGAGATGG ACGGCATAAA GGCCCTGGAG AACGTGGTGG TAATAGCGGC CACAAATCGC
CCCGACTTGG TAGACCCCGC GTTGCTGAGG CCGGGCAGAT TTGACAGAAT TATATACGTG
CCGCCCCCCG ACTTTAAGGC CAGGCTTGAG ATCTTGCTCA TACACACCAG GGCTACCCCC
TTGGCCAAAG ATGTGGACTT AGAGGAGATA GCTAGGAGGA CTGAGGGCTA CTCAGGCGCA
GATTTAGAGC TCTTGGTAAG AGAGGCGACG TTCCTCGCGC TTCGCGAAAA CATAGACACA
AAGGAGGTCT CCATGCGCCA CTTCGAGGAG GCGCTTAAGA AAGTTAGACC CTCTGTGACT
CCCGACATGT TGAAGTTCTA CGAGTCTTGG CTTGAGCGCG CCAGACAGTT AACTACTCCG
ACCAAGGCCA GGGCAACGCC TCCGCTGTAC CTATGA
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| Protein sequence | MSEWIELRVL ESKARDANRP VVRIDPEVME RAGIMVGDVV EIVGRRRTAA KVWNGLPEDR
GKGVIRMNSI LRKNADVALN ETVRVRRVEP KPAAFVKLAP VSMTIAVDAN FLQYIKQRLR
EYVVVEGDML QIHVLSQPLT FQVIQTKPSN SIVIINDDTQ IQIFEKPVSG VKIPHVTWED
IGDLEDAKQK IRELVELPLR HPELFKHLGI EPPKGILLIG PPGTGKTLLA KAVANEANAY
FVAINGPEIM SKYYGESEAR LREIFEEAKK NAPAIIFIDE IDAIAPKREE VTGEVEKRVV
AQLLTLMDGL QERGQVIVIG ATNRPDAVDP ALRRPGRFDR EIWINPPDFK GRYEILVIHT
RNMPLGPDVD LRKLAEITHG FTGADLAALA REAAMSALRR AIQSGLIDLN QPSIPPEVFE
KIKVTMADFM GALREIIPSA LREVHIEVPR VRWDDIGGLE NVKQELREAV EWPLKYPDRF
KKFGLRAPKG ILLFGPPGTG KTLLAKAVAT ESGANFVAVR GPEIFSKWVG ESEKMVREIF
RKARMAAPAV IFIDEIDALA TARGLGGDSL VSERVVAQLL AEMDGIKALE NVVVIAATNR
PDLVDPALLR PGRFDRIIYV PPPDFKARLE ILLIHTRATP LAKDVDLEEI ARRTEGYSGA
DLELLVREAT FLALRENIDT KEVSMRHFEE ALKKVRPSVT PDMLKFYESW LERARQLTTP
TKARATPPLY L
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