Gene Pcal_2102 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_2102 
Symbol 
ID4909975 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1947838 
End bp1948098 
Gene Length261 bp 
Protein Length86 aa 
Translation table11 
GC content52% 
IMG OID640125855 
ProductLSM family small nuclear ribonucleoprotein 
Protein accessionYP_001056983 
Protein GI126460705 
COG category[K] Transcription 
COG ID[COG1958] Small nuclear ribonucleoprotein (snRNP) homolog 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAAGT CGTCGCAACA AGTAAAGCTC CCATCTCCTA TTAAAGTGCT TACAAAGATG 
TTAAACAAGG AGGTGGTGGC GCGGCTTAAG GGCGGCATTG CCGTAAAAGG CGTATTGACC
GCCTACGACA GTTGTATGAA CCTAGTGTTG GACGACGCCG CTGAGCTCGA CCGAAGTGGA
GAACCAGTCA CTCGGTATGG CCGTATAGTG GTCCGCGGGT CGCAAGTTAT ATATGTCTCA
GCCATCGACG TGTCCTCATG A
 
Protein sequence
MSKSSQQVKL PSPIKVLTKM LNKEVVARLK GGIAVKGVLT AYDSCMNLVL DDAAELDRSG 
EPVTRYGRIV VRGSQVIYVS AIDVSS