| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2091 |
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| Symbol | |
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| ID | 4908246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1936786 |
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| End bp | 1940169 |
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| Gene Length | 3384 bp |
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| Protein Length | 1127 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640125844 |
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| Product | DNA-directed RNA polymerase subunit B |
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| Protein accession | YP_001056972 |
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| Protein GI | 126460694 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR03670] DNA-directed RNA polymerase subunit B |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGACT TGCTCCCCCT CCCGATACTC TCTAAGGATG GCGATGGTGA GTTTCCTTCC
CGGGACGACA GGTGGGCGCT TGTTGAGAGA TTTATTAAAG ATAAGGGGCT TGCGAATCAC
CAGATAAAAT CGTTTAACGA TTTTCTAGAC AAAAGGCTAC CGCGCATTGT TGAAGAGTTT
AAGGTTGTCG AAACTGAGAT CAAGGGGCTT AAGCTGGTAT TGGAAAAGAT CGAGGTGGGG
TGGCCTAGGA TAAAGGAGAG CGACGGCTCT GAGTCTTTGA TATACCCCAT GGAGGCTCGA
CTTAGAAATG CCACCTACGC CGCGCCTCTT TATCTCACCG CGACGCTGTA TGTCGATGAC
GAGCCTTATG TCACCGAGAC TTTTTACATA GGTGAGTTGC CTATTATGGT TAAGTCTAAG
AGGTGTAACT TGACGAGGCT AAAGCCCAGC GAATATGCGA AAAAGTTCGA AGACCCGCAG
GATTTTGGAG GGTACTTCAT CATCAACGGC AGTGAGCGCG TTATAATCTC ACAGGAGGAC
TTAGTAACAG ACAGGCCAAT ATACGACGTA GGCGATAAGC CTTCTGTAAA ATTCCTAGCA
AAGACGATCT CCACGGGGAT TGGGTATAGG AGTACATTGA CCGTGGAACT GAATAAAGAC
GGCGTTATAT ACGTCACGCT TTCCGCAATG CCTGTAAAAA TCCCGTTCCC AATATACATG
AAGGCCTTAG GCCTAGAGAC GGATGAAGAT GTGGTGAAAG CTGTCTCAGA CGACCCCGAT
ATTCAGAAAG AGCTTCTCCC CTCGCTTATC GCGGCGAATC AGGTGGCTAT AACTAGGGAA
GACGCGCTCG ACTACATAGG CGGCAAAGTT GCAGTGGGCC AGCCGCGGCC TGTGAGAATT
GAGCGTGCGC TTCAGTTGTT GGATAGGTAC TTCCTCCCGC ACCTTGGCAC AACTACCCCA
GACGAGAAGA AGCAACAGGA AATTAGGCTA AAGAAGGCGC TTATGCTAGG CCAAATAGTC
AAAGGGCTTG TCGAGCTTCA ACTTGGCCGT AGAAAGCCCG ACGATAAGGA CCACGTGGGG
AACAAGAGGG TTAGACTTGT CGGTGACTTA ATGACGCAAC TATTTAGAAC CGTATTTAAG
CAGTTTCTGC AAGAGCTAAG GAGTCAGCTT GAGAAATACT ACGCTAGGGG GAGGATACCT
CACATCCAGA CCATAGTTAG GCCAGACATT ATCACTGAGA GAGTGAGGCA GGCGCTCGCC
ACGGGCAACT GGGTTGGAGG CAAGACCGGC GTCTCGCAGA TACTAGACAG AACAAACTAC
TTGTCCACGT TGAGCTATCT AAGGCGAGTA GTCTCGTCGC TTTCAAGGAC GCAGCCACAT
TTTGAGGCCC GCGACTTACA CCCCACCCAG TGGGGCAGGC TGTGCGCCGT CGAGACGCCG
GAGGGTCAAA ACGTCGGCCT AGTAAAGAAC TTGGCCCTTC TCGCCGAGAT TACCACAGGG
GTAGACGAGA GAGAGGTTGA ACAACTACTG TACAACTTGG GGACTGTGCC TGTGCTCAAG
GCCCGCGAAG ACGGCATACG CGGCGCAGAG GTGTATCTCA ATGGGCGGCT CATAGGGATT
CACCCCAACG CCGAAGAGCT TGTCGCCACT GTGAGAAGCC TTAGGAGGCA GGGGAAGATA
AGCGATGAAA TCAACATAGC CCACATAAAC GGCTCTGTAC TGGTCAACTG CGACGGCGGC
CGCATTAGGC GGCCTCTCCT GGTGGTTGAA AACGGTAGGC TGAAGCTTAC AAAAGACATA
GTGGAGCGCG TGAGAAAGGG AGACTTGACT TGGGACGACT TAGTGAAAAT GGGCGTGGTG
GAGTACCTAG ACGCAGACGA GGAGGAGAAT GCACACATAG CTGTAGACCC CAGAGGGGAT
CTGTCCGGCT ACACGCATGT GGAAATAATT CCATCGGCCA TACTTGGCGC AATAGCCTCC
ATAATCCCCT ACCTAGAACA CAACCAGTCT CCGCGCAACC AGTACGAGGC GGCAATGGCA
AAGCAGTCCC TTGGACTTCC GCAGTCCAAC TTCCTCTACA AGCTGGATTC GAGAGGCCAC
ATGTTGTACT ACCCCGAGAG GCCCATTGTG ACAACTAGGG GACTTGAGCT GGTGGGCTAC
TCCAAGAGGC CGGCTGGCCA AAACGCCGTA GTCGCCTTGT TGACATACAC TGGGTACAAC
ATAGAAGACG CCGTAATCTT AAACAAGGCC TCTGTAGAAC GCGGCATGTT CCGCTCAGTC
TTCTACCGCA CTTATGAAAC AGAGGAGCAG AAGTACCCCG GCGGCGAGGA GGACAGGATA
GAGGTCCCCG ACAGCTCTGT CAAAGGCTAC AGAGGGCCCG AGGCCTACAG CCACTTAGAC
GAAGACGGCA TCGCGCCGCC CGAGGTCTAT GTGAGCAGCA ACGAGGTGCT TATTGGGAAG
ACGTCTCCGC CGAGGTTTTA CACAACGCTT GAGACCGAGC GCATTCTCAA GGAGAGGAGA
GACGCGTCTG TGGCCGTGCG GAGGGGAGAG AAGGGCATTG TGGACAGGGT CATCATCACT
GAGTCTCCTG AGGGCAACAA GCTGGTGAAA GTTAGACTTA GAGAGCTTAG AATCCCCGAG
CTTGGGGACA AGTTTGCCTC GCGCCACGGC CAAAAGGGCG TCGTCGGCAT GTTGCTTAGG
CAGGAGGATA TGCCGTTTAC AGAAGACGGC ATAGTGCCCG ACATAATTGT CAACCCACAC
GCGCTCCCCT CGCGTATGAC CGTGGGCCAG CTCCTGGAGA GCATAGCCGG CAAAGTGGGC
GCCGCCACGG GGCAATTGGT AGATGCGACG CCGTTCGAGG GCGTGGGGGA GGAGGACTTG
AGGAAGTTGT TGTTAAAGCT GGGCTTCCGC TGGGATGGGA AAGAGGTCAT GTACAGCGGG
ATCACTGGGG AGAAGCTCGT CGCCGACATA TTCATAGGCA TAGTGTACTA CCAGAAGTTG
CACCACATGG TGGCCGACAA GATTCACGCA AGGGCGAGGG GGCCTGTGCA GATATTGACA
AGGCAGCCCA CCGAGGGGCG TTCGCGCGAG GGAGGCCTTA GGCTTGGCGA AATGGAGAGA
GACGTCCTCA TAGCGCACGG CGCCTCTGCG CTTTTGTACG AAAGACTCGT CGAGTCGAGC
GATAAGTACG TCATGTACGT GTGCGAGTTG TGCGGATTGC CCGCGTACTT AGACGCTAAG
ACAAATAAGC CGAGGTGCCC CATACACGGA GACACTGGCC AATTTGCCAA GGTGGTAGTC
CCATATGCGT TCAAGCTACT GCTTCAAGAG CTAATGGCAC TTGGAATTTA CCCCAAGCTT
GAGCTTTCCG AGGTCTTAGA CTAG
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| Protein sequence | MVDLLPLPIL SKDGDGEFPS RDDRWALVER FIKDKGLANH QIKSFNDFLD KRLPRIVEEF
KVVETEIKGL KLVLEKIEVG WPRIKESDGS ESLIYPMEAR LRNATYAAPL YLTATLYVDD
EPYVTETFYI GELPIMVKSK RCNLTRLKPS EYAKKFEDPQ DFGGYFIING SERVIISQED
LVTDRPIYDV GDKPSVKFLA KTISTGIGYR STLTVELNKD GVIYVTLSAM PVKIPFPIYM
KALGLETDED VVKAVSDDPD IQKELLPSLI AANQVAITRE DALDYIGGKV AVGQPRPVRI
ERALQLLDRY FLPHLGTTTP DEKKQQEIRL KKALMLGQIV KGLVELQLGR RKPDDKDHVG
NKRVRLVGDL MTQLFRTVFK QFLQELRSQL EKYYARGRIP HIQTIVRPDI ITERVRQALA
TGNWVGGKTG VSQILDRTNY LSTLSYLRRV VSSLSRTQPH FEARDLHPTQ WGRLCAVETP
EGQNVGLVKN LALLAEITTG VDEREVEQLL YNLGTVPVLK AREDGIRGAE VYLNGRLIGI
HPNAEELVAT VRSLRRQGKI SDEINIAHIN GSVLVNCDGG RIRRPLLVVE NGRLKLTKDI
VERVRKGDLT WDDLVKMGVV EYLDADEEEN AHIAVDPRGD LSGYTHVEII PSAILGAIAS
IIPYLEHNQS PRNQYEAAMA KQSLGLPQSN FLYKLDSRGH MLYYPERPIV TTRGLELVGY
SKRPAGQNAV VALLTYTGYN IEDAVILNKA SVERGMFRSV FYRTYETEEQ KYPGGEEDRI
EVPDSSVKGY RGPEAYSHLD EDGIAPPEVY VSSNEVLIGK TSPPRFYTTL ETERILKERR
DASVAVRRGE KGIVDRVIIT ESPEGNKLVK VRLRELRIPE LGDKFASRHG QKGVVGMLLR
QEDMPFTEDG IVPDIIVNPH ALPSRMTVGQ LLESIAGKVG AATGQLVDAT PFEGVGEEDL
RKLLLKLGFR WDGKEVMYSG ITGEKLVADI FIGIVYYQKL HHMVADKIHA RARGPVQILT
RQPTEGRSRE GGLRLGEMER DVLIAHGASA LLYERLVESS DKYVMYVCEL CGLPAYLDAK
TNKPRCPIHG DTGQFAKVVV PYAFKLLLQE LMALGIYPKL ELSEVLD
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