| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_2081 |
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| Symbol | radA |
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| ID | 4909237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1929297 |
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| End bp | 1930295 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 640125834 |
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| Product | DNA repair and recombination protein RadA |
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| Protein accession | YP_001056962 |
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| Protein GI | 126460684 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0468] RecA/RadA recombinase |
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| TIGRFAM ID | [TIGR01954] transcription termination factor NusA, C-terminal duplication
[TIGR02236] DNA repair and recombination protein RadA |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTCTACTA GGAAAAAGAA GGCGGATGCC GAGGTGGCAC AGGCGGCTAC TGTCGCGGCT
AGCCCAGATA TCGACGTGGA GGAGCTCGAG GGCATTGGAC GTGTCACTGG GGCCAAGCTG
AAGGAGAAGG GGTACTACAC TGTGAGAGAC GTGGCCTACG CCTCTGTGAA GGAGTTGGCG
GAGATCGTCG GTAGTGAGGA GAGAGCTCAG CAAATTGTGG AAGCGGCGAG GAAAATGCTT
GGGCTTCACT CGTTTATCTC GGCTTTGGAG GTGTACGAGA GGAGGAAGAA AATTAGGCGT
ATTTCCACCG GCGTGAGAGC ACTTGACGAG CTACTCGGCG GCGGCATTGA GACTAGGGCC
GTTACTGAGG TGGTGGGCGA GTTTGGCTCG GGGAAGACTC AGCTGTGCCA CCAGCTGGCC
GTCATGGTTC AACTGCCAGA GGACAGGGGC GGGCTGGGGG CCAAGGCTAT ATACATTGAC
ACAGAGAACA CCTTCCGGCC AGAGCGCATT ATGCAGATAG CCAAGGCCAG GGGCCTCGAC
CCAGACCAAG CCCTTAACAA CATATTCTAC GCCAGGGCGT ACAGCGCCGA TCACCAAATG
GTGCTAGTGG AGCAGGCCAA GTCGCTGATT AGACAACACA ACGTGGCCCT CCTAGTGGTA
GACTCAGTAA TCGCCCACTT CCGCGCCGAG TTCCCCGGCA GGGAGAACCT CGCAGAGCGC
CAGCAGAAGT TGAATAAGCA CATCGCCGAC CTCCTCAGGC TGGCCGACGC CTACGACGTA
GCCGTCGTTG TCACAAACCA AGTGATGGCC CAGCCAGACG TCTTCTTCGG CAACCCGCTG
AGGCCAGCGG GCGGGAACAT CCTCGCCCAC GGCGCCACCT ACAGGCTGTG GCTCCGCAAG
TCCAAGGAGA ACATCCGCAT TGCCAAGATA TTCGACTCGC CCTACCACCC AGAGGGAGAG
GTTTCGTTCC GCATTACCGA GGAGGGCCTC GTCGACTAG
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| Protein sequence | MSTRKKKADA EVAQAATVAA SPDIDVEELE GIGRVTGAKL KEKGYYTVRD VAYASVKELA
EIVGSEERAQ QIVEAARKML GLHSFISALE VYERRKKIRR ISTGVRALDE LLGGGIETRA
VTEVVGEFGS GKTQLCHQLA VMVQLPEDRG GLGAKAIYID TENTFRPERI MQIAKARGLD
PDQALNNIFY ARAYSADHQM VLVEQAKSLI RQHNVALLVV DSVIAHFRAE FPGRENLAER
QQKLNKHIAD LLRLADAYDV AVVVTNQVMA QPDVFFGNPL RPAGGNILAH GATYRLWLRK
SKENIRIAKI FDSPYHPEGE VSFRITEEGL VD
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