Gene Pcal_1932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1932 
Symbol 
ID4908373 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1799241 
End bp1799870 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content54% 
IMG OID640125683 
ProductABC transporter related 
Protein accessionYP_001056814 
Protein GI126460536 
COG category[V] Defense mechanisms 
COG ID[COG1131] ABC-type multidrug transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGGCG TCGCAGTTAG AACAAACTCC TTATCCTACG CCGTGGGTGA TGTAGTGATT 
TTAAAAAATG TAAGTCTCGA AGTGGACCGG GGGGCCTTTG TAGTAATCAC AGGGCCAAAT 
GGCTCTGGGA AAACCACGTT TTTCCGCTGT CTTTTACGCA TACTCCCCTG TAGAGGCGAT 
GTGGAGATAG AGGGGGCAGA TCCTGCGATC AACCCGGCAG TGAAGCGGCG GATTGGGTAT 
GTGCCCCAGC TTTTGACTTT TCCTAAGCTA AAGGTGAGAG AAGTCGTCGA GCTACACCTA 
CGGCTGACGA ACGCTGAGGC GAATTGGGTA GAGGTGTTAG AAATGGTGAG CCTTGCGGAG 
TTGTGGAATA GGGAGGTACA ACGGCTTTCA GGGGGCGAGA GGCAGAGGTT GGCCCTGGCG 
CTGGCCTTAA GCCACAGCCC TTCAATACTC GTATTAGACG AGCCTTTCAG CAACTTAGAC 
AAGACGTGGA GGGCGTGGGC TGTGGAACAA CTGAGAAGGC TCAAAGGCGG TGTCACAGTC 
CTTATCGCAG TACATGGCGG TGACGAAGTG GCGGAGCTGG CAGACGCCGT CGTGGAAATG 
GAGGGAGGTG AGGTGAAGAG GATATGGTGA
 
Protein sequence
MSGVAVRTNS LSYAVGDVVI LKNVSLEVDR GAFVVITGPN GSGKTTFFRC LLRILPCRGD 
VEIEGADPAI NPAVKRRIGY VPQLLTFPKL KVREVVELHL RLTNAEANWV EVLEMVSLAE 
LWNREVQRLS GGERQRLALA LALSHSPSIL VLDEPFSNLD KTWRAWAVEQ LRRLKGGVTV 
LIAVHGGDEV AELADAVVEM EGGEVKRIW