| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1780 |
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| Symbol | |
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| ID | 4910233 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1650067 |
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| End bp | 1651917 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 640125529 |
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| Product | hypothetical protein |
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| Protein accession | YP_001056663 |
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| Protein GI | 126460385 |
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| COG category | [K] Transcription |
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| COG ID | [COG1293] Predicted RNA-binding protein homologous to eukaryotic snRNP |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.0000000813258 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGGTTGTGA AGACTGTATT AACCGCGCTT GACTTATTGG CCTCGTCTGT GGAGATGTCG
AGGCTTGTTG GAGCACATGT GGAAAACGTC TACAGGACGG CGGCGGGATT CCTCTTTAAG
TTTGGCCAGG GTTTTGTGAC TATCACTAGG CATAGGGTCT CTTTGACTGG GCTAATTCCT
GAGAAGACGC ATGAGGGGGC GGAGACTTTG AGGGGGCTTT TCCGCGGCGA GCGGCTTACG
TGGGTTGGCC TCCCGCGGTT TGACCGCATT GTGGAGTTCC ACTTTGAGAC TGGGACGCTC
GTAGTTGAAC TATTGGAACC TTTCAACGTT GTCGCGGTTA GGGAGGGCAG AGTTGTGTGG
CTTCTCCACA GCTATAGGGG GAAGGACAGG GAGCTCAAGG CGGGGGCTCC CTACACCTAT
CCGCCCGCTG TGTTTGTAGA CGTCTTGAGG GCCGGGGTGG AGGAGGTGGC AAAGGCGATA
GATCCGTCAG ATGTGAGGCG TAGCTTGATT AGGCGAGTTG GGACTGGACC TGAGTTCGCC
GATGAGCTCA TTGCTAGAGC CGGCGTTGAC CCCCACGCGC TAGCCGCCGC GTTGAAGAAA
ATCGTGGACG ACGTGGCGGC GGGGAGGCTT GAGCCGTCTG TGTGCATAAG GGGCGGCGCC
GCTGTGACCG TCCTCCCCAT TGTGCCTGTG GCCGCCAAGT GCGACGAGGT GAGGCGGTTT
GACTCATTCT GGGTTGCCCT CGACTTCTAC TTTGGCCCAC TGGAGCTGGA GGCGGCTAAG
GCGTCGGCTA CGCGGGAGCT AGAGCAGAGG CGGAGGCGGC TGGAGGCGAG CATACAGGAG
TTGGAGAGGA AAATTCCTGA GTACAGAGGC GAGGCGGCGA GGCTCAAAGC TCTTGCCCAT
AGGCTGTTAG TGTATAAGTA CGAGGTAGAG CAAGCCTTGG CTGGCTCCGA ATCAAGTATA
CGTGTAGTAT ACGTAGACGG AACTAGAGTA AAGATAATTC TGCCAGAGGG CGACGAGGTG
GAGATTAGGC GAGATGTACA GTTGGGGCGC CAAATCTCTG CCTTGTTTGA GAAGGCCAAG
GAGTTGGAGG AGAAGGCGGC CAAGGCGCAG GCAGTTCTAG ACAAGATGAG GGGGGAGTTG
GCTAAGCTGG TGGAGGAGCA GAGGAAGGCG GAGGAGAAGG TGAAGTCGTC TGTCAAGGCT
GTGGTTGAGA GGGAGTGGTT TGAGAAGTAC CACTGGACTG TGACCACTGG GAAGAGGCCG
GTGTTGGGCG GCCGCGATGC CTCTCAGAAC GAGTCCATTG TCCGGAAGTA CTTAAAGGAT
CACTACCTGT TCTTCCACGC GGATATCCCC GGCGCCTCTG TGGTAATAGC GCCACCCATA
GAGGACCCCC TTGAGGTGCA CCAAGTGGCC CAGTTCGCCG CGGCGTATAG CAGGGCGTGG
AAGATAGGCA TTCACGCGAT CGACGTCTAC TACGCCAGGG GGGAGCAAGT GTCTAAGCAG
CCGCCGGCCG GCCAGTACTT GGCGAGGGGG TCGTTCATGG TGTATGGAAA GAGGGAGTAT
GTGAGAAACG TGAGACTGGA ACTCGCCGTG GGCTGTAGAC GCGACGGCGA GGCGGCGAGA
GTGGTCGCCG CGCCGCCTAA GTCGGCTCCC TTACTCGCGG AGAAATACGT CGTGGTGACC
CCTGGGAACG TTGAGAAGAG TAGGCTGGCG AAGGAGTTGG CGGAGAAGTG GGGCGGTTGC
AACGTTGATG AGATAGTGGC GGCCTTGCCC GGCCCCTCGA GGGTGTCTGA GGTGGGCAAG
GGCTCGCCGC TGTCTTGGGA GGAGATAAGG GAGATATTTA AGTCGTGGTA G
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| Protein sequence | MVVKTVLTAL DLLASSVEMS RLVGAHVENV YRTAAGFLFK FGQGFVTITR HRVSLTGLIP
EKTHEGAETL RGLFRGERLT WVGLPRFDRI VEFHFETGTL VVELLEPFNV VAVREGRVVW
LLHSYRGKDR ELKAGAPYTY PPAVFVDVLR AGVEEVAKAI DPSDVRRSLI RRVGTGPEFA
DELIARAGVD PHALAAALKK IVDDVAAGRL EPSVCIRGGA AVTVLPIVPV AAKCDEVRRF
DSFWVALDFY FGPLELEAAK ASATRELEQR RRRLEASIQE LERKIPEYRG EAARLKALAH
RLLVYKYEVE QALAGSESSI RVVYVDGTRV KIILPEGDEV EIRRDVQLGR QISALFEKAK
ELEEKAAKAQ AVLDKMRGEL AKLVEEQRKA EEKVKSSVKA VVEREWFEKY HWTVTTGKRP
VLGGRDASQN ESIVRKYLKD HYLFFHADIP GASVVIAPPI EDPLEVHQVA QFAAAYSRAW
KIGIHAIDVY YARGEQVSKQ PPAGQYLARG SFMVYGKREY VRNVRLELAV GCRRDGEAAR
VVAAPPKSAP LLAEKYVVVT PGNVEKSRLA KELAEKWGGC NVDEIVAALP GPSRVSEVGK
GSPLSWEEIR EIFKSW
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