| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1778 |
|---|
| Symbol | |
|---|
| ID | 4908622 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 1648723 |
|---|
| End bp | 1649607 |
|---|
| Gene Length | 885 bp |
|---|
| Protein Length | 294 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640125527 |
|---|
| Product | dihydroorotate dehydrogenase |
|---|
| Protein accession | YP_001056661 |
|---|
| Protein GI | 126460383 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0167] Dihydroorotate dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000000536627 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTTGT TAACCCTCGG CAAGTTGCTA CACTTCGTAC ATCCCGAAAT TAGCCACAGG
CTGGGGGCCC TGTTGTTCTC AGCCCCGTTG CCCAGCTGTC GATGTAGAGA GAGGTGGCGT
ATAGGCGAGG TGGAGGTGTG CGGCCCAGTG GGGGTAGCCG CTGGCTTAGA CAAGGGAGGG
ATGTACGCCA GGTTTCTCTC CTTCTTCTGT CCCGGCTTCG TGGTCGTGGG CTCCACGCTC
CCGAGGCCTA GGCGGGGCAA TAAGCCGCCT AGGATGGCCA GAGTGCGCCC CTACTCCCTG
GTGAACGCCA TGGGGCTCGG CTCCCCCGGC CTGCCCGTGG TGGTGTCGAG GGTGGCCAAG
GTAAACTACC CGCTCTTCAT AAGTCTAGCA GGCTTCACCG CCAAGGACTT CCTAGTACAA
CTGAGATTTC TAGAGCGGCA CTTTAAGCCA GCGGCCGTTG AGATAAACAT TTCAAGCCCC
ACGTACAAGG GCTTTTGGAA AACCGCGCCG CAACTGGCAG AGGTGGATAT ACCCATATTC
TTGAAGGTGG GCCCCTCTGC CGACTTGCCG TCTGCCGTGG CACAGGCGAG GAGGGCAGGG
TGGGGCCTCG TTGTGACCAA CACCATCCCC GTCGAGGACC GCCGAATTAG CGTGGGGCGA
GGCGGCCTCA GCGGCTTGCT GTTGTACAGA TACGGCTTAG AGGCATTGAA AAAGGCTAGG
CGCCTCGCAG GGAAAGATAT TGCGATTATC TATGTCGGCG GCGTCTTTAC CTGTAGACAA
GTGAGGGAGG TTTTGGCCTA CGCAGACGGC GTCGAGGTCT TAACCGCCGT GCTGTACTTC
ACCCCCGCTA TATTGAGGTG GCTTAACCAG TGTGGACGCA GTTGA
|
|---|
| Protein sequence | MVLLTLGKLL HFVHPEISHR LGALLFSAPL PSCRCRERWR IGEVEVCGPV GVAAGLDKGG
MYARFLSFFC PGFVVVGSTL PRPRRGNKPP RMARVRPYSL VNAMGLGSPG LPVVVSRVAK
VNYPLFISLA GFTAKDFLVQ LRFLERHFKP AAVEINISSP TYKGFWKTAP QLAEVDIPIF
LKVGPSADLP SAVAQARRAG WGLVVTNTIP VEDRRISVGR GGLSGLLLYR YGLEALKKAR
RLAGKDIAII YVGGVFTCRQ VREVLAYADG VEVLTAVLYF TPAILRWLNQ CGRS
|
|---|
| |