Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1775 |
Symbol | |
ID | 4909488 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 1645915 |
End bp | 1647216 |
Gene Length | 1302 bp |
Protein Length | 433 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 640125522 |
Product | extracellular ligand-binding receptor |
Protein accession | YP_001056658 |
Protein GI | 126460380 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000000602209 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGGCGTCCA AAACTCTCTA CATAGCAATT GTCGTTGTTG TAATATTGCT GGCCGCCGTG GCGGCGCTTC TGCTAATGGG AGGAGGCCAA CAGCCGCCTA CTCAAACAAC AACCGTCCAA CCCACCCAAA CTACCAGCCA AAAGGTGTTT AAACTTGGGG CCCTACTGCC TCTCACAGGC GGCTTCAGTA GCTATGCAAA ACTTGCACAA TGCGCTGCGC AACTCGCAAT CGACGATCTA AATGCCGAGT ATGGGAGCAA GGGCATAAAG TTTGAACTAT ACGTGGAAGA CACGCAACTT GATCCAAACA TCGCACTACA GAAGTTACAG TCGCTGTACG CAAGAGGCGT GAGGGCGGTA CATGCGGGGT TGACCAGCAG AGAGGCGTCA GGCGAGAAGC CCTTCGCAGA TCAAAACAAG ATCATACTAT TCAGCGCGTG GTCTACCTCA AGCCTCCTAG CCATACCCAA CGACTGGCTA TATAGAATAG TTGGGACAGA TGCGAAGCAA ATAAAGGCCA TCGGCGCTAT TATAAAGCAA CTGGGCGTAA AAAACGTCGC AATAATCTAT AGAAAGGACA CATACGGCGA GGGGCTATAC CTAGAGTTAC AGAAGGAGGC AAAAGCACGT GGATTTAACT TAGTAGCCGC CGCGTCGTAC GACCCAGACC CCAAAGTTTT TCCACAAGCA GCGCCAGAGG CCGTGAGGTC AATCTCCTCT AAGGTAAAAG ACCTAGTGGG GCCGGACTTT GCACTAGTAA TAGTGTCTTT TGAAGACGAC GGCTCCGTCG TATTAAAAGC CATAGGCCAA GACCCAGTTC TCTCAAAGGC CAGACTCATA GGAACAGAGG GCATGGCGTT CTCCCCCATC TTGCTCAAGG AGGCGGGAGA CGTCATGGCC AACGGCAAAA TCATAGGGAC AACCAACTGG GCCTTACCCA CGACCCCAGA GTACCAAGAC TTCTACAAGA AGTTCAAAGC CAAGTGCGGC GCCGAGCCCA TAACCCCCGC GCCCCAGTCA TACGACATAA TCAAAATGCT AGGCGAAATA ATGGCCACAA TAGGCACAGA CGACCCAGAC AAGGTACGCG CCACGCTCGA GCAGTGGGGC AAAGAAGGCA GATATAAGGG AGCCACAGGC GTAGTGCTAC TAGACGAAAA CGGCGATAGG GCAAACCCCA ATTTCCTACT ATGGGGAGTC ACGTCGAAAA ACGGCACACT TACCTACATA GAAGTAGGCT ACTACGACTA TGACAAAGAC ACCATAACAT TTACACAAGA GGGACAACAA TACTTTAAAT AA
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Protein sequence | MASKTLYIAI VVVVILLAAV AALLLMGGGQ QPPTQTTTVQ PTQTTSQKVF KLGALLPLTG GFSSYAKLAQ CAAQLAIDDL NAEYGSKGIK FELYVEDTQL DPNIALQKLQ SLYARGVRAV HAGLTSREAS GEKPFADQNK IILFSAWSTS SLLAIPNDWL YRIVGTDAKQ IKAIGAIIKQ LGVKNVAIIY RKDTYGEGLY LELQKEAKAR GFNLVAAASY DPDPKVFPQA APEAVRSISS KVKDLVGPDF ALVIVSFEDD GSVVLKAIGQ DPVLSKARLI GTEGMAFSPI LLKEAGDVMA NGKIIGTTNW ALPTTPEYQD FYKKFKAKCG AEPITPAPQS YDIIKMLGEI MATIGTDDPD KVRATLEQWG KEGRYKGATG VVLLDENGDR ANPNFLLWGV TSKNGTLTYI EVGYYDYDKD TITFTQEGQQ YFK
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