| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1715 |
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| Symbol | |
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| ID | 4909858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1595507 |
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| End bp | 1596094 |
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| Gene Length | 588 bp |
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| Protein Length | 195 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125462 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001056598 |
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| Protein GI | 126460320 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01493] Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.101498 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTACATCT TCGACCTCGA CGGGACGCTC GTGGAGTCGG TGGACGCACA CATCGGGGCG
TGGATAGAGG CATTGGAACT CATCGGCATC AAAAAGCGGA GAGAGGAGCT GGCCCCTCTA
ATGGGGTTGC CCGCTCTCGA AATAGCGCGG CGCATAGCGC CTCAACGCGC CGAAGAGTTG
GCAAGAATTA AGAACAAGCT ATTCCTAGAA AAGTACCTAG GTGCCGTGCG CGCATACGAC
GACGCGGCTG TGCTGTCGCG CCTGCCAAGG CCCATAGCCG TGGTCACTTC GGCAAGCGGC
TACGTGGCCA GGGAGATCCT AAAGGCCACG GGACTCGCCG AGTATGTGGA CTTAGTGGTG
GGAGGCGACG AGGTCCCGCG GGGAAAGCCG GCGCCGGACC CCCTCTACCT AGTGGCAAGA
CGCTTCGGGG TCCCCCCAAG CGAGATGGTG GTGGTAGGCG ACAGCGAATA CGACATTGAG
ATGGCTAAAA ACGCCGGCGC TTTAGGCGTC TGTATAGCTA GACGCGGCGT CCCCTGCAGA
GGAGCTCACC GCGTCATCTC CACACTCTTC CAACTACTGG GGATATAA
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| Protein sequence | MYIFDLDGTL VESVDAHIGA WIEALELIGI KKRREELAPL MGLPALEIAR RIAPQRAEEL
ARIKNKLFLE KYLGAVRAYD DAAVLSRLPR PIAVVTSASG YVAREILKAT GLAEYVDLVV
GGDEVPRGKP APDPLYLVAR RFGVPPSEMV VVGDSEYDIE MAKNAGALGV CIARRGVPCR
GAHRVISTLF QLLGI
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