| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1671 |
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| Symbol | |
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| ID | 4909202 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | - |
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| Start bp | 1558899 |
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| End bp | 1560044 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640125418 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001056554 |
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| Protein GI | 126460276 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0000914056 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGACGTCCG CGTTCAAGCT CATAGTCTTC AGCGGCCTTG GCTGGATGTT CGACGCCATG
GACGTGTTGA TACTGTCCTA CCTCCTCGTT GCCGCGTCCA AGGATCTGGG ACTTGATACA
CAAGCCAGAG CCATCGTGGT GCTTGCCAAC AACCTGGGCA TGTTAATAGG CGCCATACTC
TTCGGCAGAC TCTCGGACAG GGTAGGCAGG AGGCCCGTAT TTATGACGAC GCTATTGATC
TACAGCGTAG CGACGGCTCT GTCGGCGTTT TCACGAACAT GGCCAGACTT GGCCATCCTC
AGGCTAATCG CCGGGCTAGG CCTTGGCGGA GAGTTGCCCG TCGTCGCCGC CTACGTCTCA
GAGAGCTCGG CGCCTAAGGA GAGGGGGAGA AACGTCGTTT TGCTCGAGAG TTTCTGGTCG
CTTGGCGCAA TTGCGGCCGC AGCGGTGTCT CTCTTCCTGT TCACCAGCAT AGGGTGGAGA
GCCTCCCTTC TACTGCTAGG CCTCACAGCC TTTTACGTGT TTGTAATTAG GCGGACTCTG
CCCGAGTCAC CCGCGTGGGC CACCAAGGCG GAGGCGCGGC TGACTGCCGA GCTGATCCGC
AGAGCCGCCG TGGTGTCTGC CGTGTGGTTT GCCCTGGCCT TTGGGTACTA CGGCGCATTT
CTCTGGCTAC CCACCATATT GGCCACGGAG AGGGGGTTCA CGGAGGTCCG CACCTACCAG
TTTATGTTCT ACACAACTCT CGCCCAGTTG CCAGGCTACT TCTCAGCGGC GTACTTGGTA
GAGAAAATCG GCAGAAGGCC CACCGCCGCG GCCTACTTCC TAGTCTCAGC CCTCGCCGCG
TTGCTCTTCG CAAACAGTGT GTCAAGTACG GAGCTCTTCC TCTGGGCGCT GGCACTGAAC
TTCTTCAACC TCGGCGTGTG GGGCGTGATA TATGCCTACA CGCCGGAGCT CTTCCCCACA
GCCGTGAGAG GCGCCGCCAT GGGCATCGCC GGCTCTGCGG CGCGCGTGGG CATGATCATT
GGGCCCACGC TTTACCCCCT CATTGGGATA AACGCCATGG CCGTAATCGC GTCGCTGTGG
GCCCTAGCCG CCGCCCTCGT CTACCTCCTG CCTGAAACTC GGCATGTGCA AGCCGGCGAT
CTTTGA
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| Protein sequence | MTSAFKLIVF SGLGWMFDAM DVLILSYLLV AASKDLGLDT QARAIVVLAN NLGMLIGAIL
FGRLSDRVGR RPVFMTTLLI YSVATALSAF SRTWPDLAIL RLIAGLGLGG ELPVVAAYVS
ESSAPKERGR NVVLLESFWS LGAIAAAAVS LFLFTSIGWR ASLLLLGLTA FYVFVIRRTL
PESPAWATKA EARLTAELIR RAAVVSAVWF ALAFGYYGAF LWLPTILATE RGFTEVRTYQ
FMFYTTLAQL PGYFSAAYLV EKIGRRPTAA AYFLVSALAA LLFANSVSST ELFLWALALN
FFNLGVWGVI YAYTPELFPT AVRGAAMGIA GSAARVGMII GPTLYPLIGI NAMAVIASLW
ALAAALVYLL PETRHVQAGD L
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