Gene Pcal_1584 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1584 
Symbolrpl4lp 
ID4909004 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1473325 
End bp1474182 
Gene Length858 bp 
Protein Length285 aa 
Translation table11 
GC content59% 
IMG OID640125332 
Product50S ribosomal protein L4P 
Protein accessionYP_001056468 
Protein GI126460190 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID[TIGR03672] 50S ribosomal protein L4P 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGCGCCG TGGTTAAAGA GTTGTTGAAG TTCAAGCTTC TGGACCTCTC GCCGTACATA 
AAACCAGCGG AGGAGAGGCC TCCCGAGGCT CTTAAGGTTT ATGACGTAAA TGGGCAGTAC
ATGGCCGACA TAGAGACGCC GATACACTTC TACGAGCCCG TGAGGCCCGA CTTGATTAGG
AGAGCCTACT TAAGCGCCTT GAGCGCGAGG TTTCAGCCTA AGGGCGTCTA CGAGGGCGCT
GGCAAAGAAC ACAGTTGCGA GTCCTTTGGC GTGGGCTTGG GAATTGCGAG AATTCCGAGG
TACAAGGGGC ATCTCTGGCC GCGTGGCTGC TTTGCCCCTA ACACTAGGGG AGGCAGGAGG
GCCCACCCGC CGAGGCCTGA GAAGAAGTTG CACGAGGAGA TTAACTGGAA GGAGAAGAAC
TTGGCCATTA GGTCCGCCAT AGCGGCCACT GCGTACAAGT CGTGGGTAGC CGCCAGGGGG
CACATGGTGG AGAAGGTCCC CTCTCTGCCG CTTGTGGTGT CGGGGGATGC TGAGAAAATT
GCTAAGGCCA AGGAGGCGAA GAAGCTCTTC GAGGTGCTGG GCCTCTGGCC CGACGTGGAG
AGGGCGGCGG AGGGCGTGAA AATTAGGGCT GGGAAGGGGA AGATGCGCGG CAGGAGGTAC
AAGGAGCCTA AGAGCGTGTT AGTCGTGGTG TCGGAGCTGG ACGTGCCTCT AATAGGCGCC
GTTAGGAATT TCCCAGGCGT AGACGTTGTG CCAGTGAGCC ACTTAAACAT GCTGGTGCTG
GCTCCCGGCG GCGTGCCGGG GCGGCTGACC CTCTGGACCG CCACGGCTGT GGAAAGGCTG
AAGGGACTGT TCCTATGA
 
Protein sequence
MGAVVKELLK FKLLDLSPYI KPAEERPPEA LKVYDVNGQY MADIETPIHF YEPVRPDLIR 
RAYLSALSAR FQPKGVYEGA GKEHSCESFG VGLGIARIPR YKGHLWPRGC FAPNTRGGRR
AHPPRPEKKL HEEINWKEKN LAIRSAIAAT AYKSWVAARG HMVEKVPSLP LVVSGDAEKI
AKAKEAKKLF EVLGLWPDVE RAAEGVKIRA GKGKMRGRRY KEPKSVLVVV SELDVPLIGA
VRNFPGVDVV PVSHLNMLVL APGGVPGRLT LWTATAVERL KGLFL