Gene Pcal_1517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1517 
Symbol 
ID4910115 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1417142 
End bp1417795 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content66% 
IMG OID640125266 
ProductABC transporter related 
Protein accessionYP_001056402 
Protein GI126460124 
COG category[H] Coenzyme transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1120] ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value3.2537e-11 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGTACGTGG CCTTTGACGT AGAGAAGCGC CTCGGCGAAT TCCGCCTGTC GGCAAGGGGG 
GAGCTGAGGG AAGGCGCCAC ATGCGTAGTG GGGCCCAACG GCGCGGGTAA GACCACGCTG
TTCAAAATAC TGGCCGGCAT CCTCAAGCCA GACAAGGGGC GGGTGGAGTA CGTCGGCGTC
AAGTCGAGGG CGTACGTGGG CGACTTATAC GCCCCGCCAG ACAGCACAGT GATGGACGTA
GTCCTCGCCG GCCGGACGCG CTTCGGGGGG AAGCCGGTGG GGAGGGAAGA CGCCGCGGCC
GCGGCCCGCT TCGCCGAGCT AGTGGGCGTC GGGGCCCTCC TCCAGAGGAG GTGGGGCACC
CTCAGCGGGG GGCAGAGACA ACTCGCCGTG GTGGCCGCGG CGCTAGCCAC AGAGGCCGAC
CTACTCCTCC TCGACGAGCC CATGGCGAAC CTCCACGGCG ACAGACGCGC CGAGCTGGCG
GAGTTGCTCA AAAGAGAGGC GCGGGGCAAG ATAATAGCCT ACACCACACA CCACCTCGAC
GTCCTGCCCT GTTGCGACTA CGTAATGGTG ATAGAAGACG GAGAGGTCAA GTGGGCAGGG
CCGCCCAGCC AGATAGACCC CGCCCACCTC ACGCGGCCAA AGGCGTGTAG ATAA
 
Protein sequence
MYVAFDVEKR LGEFRLSARG ELREGATCVV GPNGAGKTTL FKILAGILKP DKGRVEYVGV 
KSRAYVGDLY APPDSTVMDV VLAGRTRFGG KPVGREDAAA AARFAELVGV GALLQRRWGT
LSGGQRQLAV VAAALATEAD LLLLDEPMAN LHGDRRAELA ELLKREARGK IIAYTTHHLD
VLPCCDYVMV IEDGEVKWAG PPSQIDPAHL TRPKACR