| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1388 |
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| Symbol | sdhA |
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| ID | 4909038 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1302196 |
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| End bp | 1303938 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640125138 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001056274 |
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| Protein GI | 126459996 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.394605 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTAT TATCTTGCGA CGTAGTGGTG GTGGGCTCGG GACTGGCGGG CCTGCGGGCC
GCCGTGGCCG CCGCGGCGGC TAGCGAGAAG CTCTCCATCT GCGTAGTCAC CAAGGTGGCG
GGGCCCCGGT CTCACACCAT CTCAGCCGAG GGCGGCATGG CAGCCGTGGT GCACCCAGAG
AAGACTGGAG ACACGCCGCA CCTCCACGCC TACGACACTG TGAAAGGCGG CGACTTCCTC
GTGGACCAAG ACGCGGCCAT GTTGCTCGCC CAAGAGGCGC CGTCCGAGGC CCTTTTCTTG
TACAAGATAG GGGTCCCCTG GAATAAGGAC TCGGACGGGA CCTTCTCCCT CAGGCTCTTC
GGGGGGATGA GCAAGCCCAG AACCCTCTTT GTAAAAGACA AGACCGGCTT CTACATACTA
ACCGCCTTGT ACAAGCACGC CAAGTCTTTC TCCAACATCG CCTTCTACGA AGAGCACCTG
GTGACCAAGC TGGTGGTTAA ACACAACGTA TTCTACGGCG TTACTGCTCT AGACATGAGG
AGGGGGGAGT TCAAGTTCTT CAAGGCCAAG GCCGGGGTAA TAGCCACGGG GGGCGGCGGC
CGGATGTTCA AGCTCACCAC CATGGGCTAC TTAAACACTG GGGAGGTGTA CGGCTTCGCC
CTCCGGGAGG GCATAGCGTT GAAAGACATG GAGTTTGTCC AATGGCACCC CACGGCTCTC
GTCCCCAGCG GAATCTTGAT CAGCGAGGCG GCCCGGGCCG AGGGGGCCTA CCTCGTGAAC
AAGTACGGCG AGAGGTTCAT GAGGAGGTAC GCGCCGCAGA AGATGGAGCT GGCCCCCAGA
GACGTAATAG CCAGGGCAAT AGCCATGGAG TGCATGTCGG GGAGGGGCTT CACCTGGCGC
GACGGGACCT GCTACGTCGG GCTCGACGTC CGCCACCTAG ACCCAGCCAG GGTAAAGGAG
CGGCTCCCCC TCCTCCTAGA GCTCTCCAAG ACCTACGCGG GGGTGGACCC CTTCACAGAG
CTCATCCCCG TGGCCCCCGC GGTGCACTAC TTCATGGGCG GCATACACAC AGACCTCTAC
GGCAGAGTTT TGACCGTGAG CGGGGAGTGG GTTAGGGGGC TGTGGGCCGC CGGCGAGGCC
GCGGCGGTGA GCGTACACGG CGCAAACCGC CTAGGCTCCA ACTCCCTCGC CGAGTGCGCG
GTGTGGGGCA GGCTGGCCGG AGAGCAGGCG GCTGAGTACG CCAAGGGGCG GGGGGAGGGG
GAGGCAGACG GCGCGGTCAA GGCGCTGGTC GAGAGAGAGG AGAATAGGGT CTTCTACAAG
CTGGGGAGGA AGGAGGTGGG GGGCACCTCA GCCGCGGCCA TTAGGTCTGC GCTTCAAAAC
GCCATGCACA AGGGGGCAGG CATCATTAGG GAGGAGTCGG CGCTGGCGCA GGCCCTTTCG
GAGGTGGCGA AGCTCATCTC GGCCTTTAAA GAGGTCAACT TGCACGACAC TGGCAGAATA
TACAACATGG AGCTAAGGGA GATGGTGGAG CTTGACGGCA TGCTCCTGGC CGCCCACGCT
GTGCTCCTAG GCGCCTACTT TAGGAGGGAG TCGAGGGGCG CCCACTACAG GGTGGACCAC
CCGCAGAGAG ACGACAAGAC TTGGCTTAAG CACACCCTAG TGCACAAAGT GGGAGAGGGG
TTCGGCGTCT ACTACGCACC GGTGAAGGTG GACAAGTGGC CGCCCGAGGT TAGGGCGTAT
TAG
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| Protein sequence | MEVLSCDVVV VGSGLAGLRA AVAAAAASEK LSICVVTKVA GPRSHTISAE GGMAAVVHPE
KTGDTPHLHA YDTVKGGDFL VDQDAAMLLA QEAPSEALFL YKIGVPWNKD SDGTFSLRLF
GGMSKPRTLF VKDKTGFYIL TALYKHAKSF SNIAFYEEHL VTKLVVKHNV FYGVTALDMR
RGEFKFFKAK AGVIATGGGG RMFKLTTMGY LNTGEVYGFA LREGIALKDM EFVQWHPTAL
VPSGILISEA ARAEGAYLVN KYGERFMRRY APQKMELAPR DVIARAIAME CMSGRGFTWR
DGTCYVGLDV RHLDPARVKE RLPLLLELSK TYAGVDPFTE LIPVAPAVHY FMGGIHTDLY
GRVLTVSGEW VRGLWAAGEA AAVSVHGANR LGSNSLAECA VWGRLAGEQA AEYAKGRGEG
EADGAVKALV EREENRVFYK LGRKEVGGTS AAAIRSALQN AMHKGAGIIR EESALAQALS
EVAKLISAFK EVNLHDTGRI YNMELREMVE LDGMLLAAHA VLLGAYFRRE SRGAHYRVDH
PQRDDKTWLK HTLVHKVGEG FGVYYAPVKV DKWPPEVRAY
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