| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1344 |
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| Symbol | |
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| ID | 4910230 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 1261033 |
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| End bp | 1262508 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640125096 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001056232 |
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| Protein GI | 126459954 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.286284 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCGC CTTCCCAGAT TGCAGAAGTG TTGGACGAGT ACGAGGTGTC TGAGTTTGTG
CATGCCGTTG TCTACGTGGA TAGGGACGGG TTTAGGCGGT ATAGGGCTGT GGAGCCTCCG
CTGGGCGAGG AGGAGGCGGC GGCCCTCAAG AGGCTTAAGT CGGCTATTCA GAACGTGGGG
GGTGTCCGCG ACGGGGTGCT TAAGCTGGCG CGGGAGAGGC GGGTTGAGTA CTTGGAGGAG
TTGGCGAAGA GGGCGGCGTC TGAGTTTAAG ATTAGGGTGG ATGAGCGGGC GTGGAGGAAG
GTCATGTACT ACCTCCGGCG GGATCTGCTG GGGTACGGCA AGTTGGACCC CCTGTTCGCC
GACCCCTTTA TCGAGGATAT CCACGTCGAT GGGCCGGGCA GTGTGTGGAT TTGGCACGCG
AGGTGGGAGT CTCTGCGCAC GGACGTGGCG CTGTCTGAGG AGGAGCTCGA CGCCTATGTG
CAGAGGCTTT CGTCGCTTGT GGGTAAGCCC GTCTCGTACG CCGACCCGGT CCTCGAGGGG
ATGCTCCCGG AGGGGTACCG CCTGGAGTTG GCCATTCCCC CCGTGTCGCC TAGGGGCCCC
TCTTTCGTGG TTCGGAAGTA CTTCGTGGAG CCCCTGACCC TGGTCGACCT TGTGAAAATG
GGCACGATAT CGGCGGACGC CGCGGCGTAT CTGTGGCTTA TGTTGGACTA CGGGCGTAAC
ATTGTGATTG TGGGGCCGAC GGGTGCTGGG AAGACCACCT TGCTCAACGC CCTCCTCTAC
TTGGTGAGGC CGGAGGCCAA GATTCTCACC ATCGAGGACA CTAGGGAGAT TAACATTGTC
CACGACCACT GGCAGGCCTT GCTCACAAGG CCGGCGAGGG GGGAGGGGGT GCGCGACGTC
TCTGCGTTTG ACCTGCTGGC CGTTGCCATG AGGTCACGGC CTGACTACGT GGTGGTGGGG
GAGGTGAGGG GGGAGGAGGC GTACGTCCTC TTCCAGGCCT TTGGCTCTGG CCACTCGGGC
GCCACCACTA TCCACGCAGA GACTATCGAG GACGCGGTTA GGCGCCTCTT GACTAGGCCC
ATGAACGTCC CGCCGATGCT CCTCGGCCTA GCCCACGTGT TTGTGAGAAT TATGCGGGTC
AAGGTGGGGG AGAGGGTGGT TAGGAGAGTG GTGGAAATCG CCGAGAACAT GGGCGTCTCT
AGAGGCGGGA GACCCCGGCT ACACTACGTC TTTAGGTGGA ACCCCGAGAA AGATGCATTG
GAGCAGGTGG AGGAGAGTTT GCACCTGGAG ACTATATCGA GGGCGCGGTT TGTGCCGCTT
GAGCAGCTGA GGGAGGAGTA CCAGCGGCGG AGGAGGCTCA TCTCAATTAT GGCGGAGAGG
GGCTACACCT CGCCGTACGT CGTGGCGAAG ATCTTCACCC GCTACCACTT AAACCCGGAG
GCGGCCCTAG CCGCCGTGGA GCGGGGGGAG GTATGA
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| Protein sequence | MTSPSQIAEV LDEYEVSEFV HAVVYVDRDG FRRYRAVEPP LGEEEAAALK RLKSAIQNVG
GVRDGVLKLA RERRVEYLEE LAKRAASEFK IRVDERAWRK VMYYLRRDLL GYGKLDPLFA
DPFIEDIHVD GPGSVWIWHA RWESLRTDVA LSEEELDAYV QRLSSLVGKP VSYADPVLEG
MLPEGYRLEL AIPPVSPRGP SFVVRKYFVE PLTLVDLVKM GTISADAAAY LWLMLDYGRN
IVIVGPTGAG KTTLLNALLY LVRPEAKILT IEDTREINIV HDHWQALLTR PARGEGVRDV
SAFDLLAVAM RSRPDYVVVG EVRGEEAYVL FQAFGSGHSG ATTIHAETIE DAVRRLLTRP
MNVPPMLLGL AHVFVRIMRV KVGERVVRRV VEIAENMGVS RGGRPRLHYV FRWNPEKDAL
EQVEESLHLE TISRARFVPL EQLREEYQRR RRLISIMAER GYTSPYVVAK IFTRYHLNPE
AALAAVERGE V
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