Gene Pcal_1286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1286 
Symbol 
ID4909961 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp1199326 
End bp1200375 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content51% 
IMG OID640125039 
ProductCRISPR-associated RAMP Cmr1 family protein 
Protein accessionYP_001056176 
Protein GI126459898 
COG category[L] Replication, recombination and repair 
COG ID[COG1367] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) 
TIGRFAM ID[TIGR01894] CRISPR-associated RAMP protein, Cmr1 family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.00110852 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAGAGCTG AATTCGAGGT AACGATAGCG ACCCCCCTCT CCGCGGGCTG GTACGACCCC 
GCCCTAGTGG ACAGAAACTT CTACATCCGC CCCACGGAGA TCAAAGGAGT GTGGCGGTGG 
TGGGCTAGGG CCTTCGCCGC CGGCGCCCTG TACGAGGCGG GTTGCACAGG CCCAGACTTC 
CTCAGGCGGG TACACGAAAT TGTGGCAGAG AGACTTGGCC TAGGCTCCAC CAAAGCCGCC 
TCGCGGTACG ACCTCACAGT GGAGGTGCTG GAGAGGCCCA GAGTAGTCGA CAGCTCGAGG 
GAAAATCTCC AGCGATTTAG GCTATTGAAT CTTGGCAGAA GAAAGGGAAG ACCTGCAGTT 
GAATATGCGA TTGGTGGGAG ATTCAAAATA ATTCTAGAGG GTGACGCTGA TATCCAATTA 
GTTGCATCCA TATTAGCAGT AGCTCTAACC CTCTCGGGCA TAGGCAAGGG AGGCCGTAAA 
GCACTTGGGT CTCTTGATAT TATCAGAGTC TCTGGGGCCG CACCCCGACG CCCGCTAAAT 
GAAATAATAA ACGAGATAAG ACGACAAATA TCAGTACAAC GATGTGGGCC TCCTAGGGAA 
CTCCCCAAGA TTTCTGCTGT GTCGAATGAG GTATTTGAAG TATACAAAGT GAACGTGGAC 
TTCCATCATC TTCATAATAT GTTCCTAAGA TCAGAAAGAG CTAGAATGGC AAAGTTGTAC 
TACGCCGCAC CAGACCCGCT TAATCAAAAG GCATGGTTCC TTGGCCTACC AAGAGAGCAG 
AAGGGCACAG GCTATCATAT CAACGACATA GAGGTGAAGA GAAGGGCTTC GCCTATCTTT 
GTTGCGTGGC ATTCCATCCA GCATGTATTC GGAGGCGGAG GCTATATTTC CATATTTCTC 
TCGCAAGATT GGCCTACTCA ACTTACTTGG GTAGGAGAGA GCGGTAGAAA ACTAATTCAG 
ATAAATGAAC AAACGCTCCG AGATGCCAAG TCGGCCTTCC TTGCTCTCTT AAACCAATTC 
GGGTGGAAGC CGCAGAGGGT ATGGCCCTAG
 
Protein sequence
MRAEFEVTIA TPLSAGWYDP ALVDRNFYIR PTEIKGVWRW WARAFAAGAL YEAGCTGPDF 
LRRVHEIVAE RLGLGSTKAA SRYDLTVEVL ERPRVVDSSR ENLQRFRLLN LGRRKGRPAV 
EYAIGGRFKI ILEGDADIQL VASILAVALT LSGIGKGGRK ALGSLDIIRV SGAAPRRPLN 
EIINEIRRQI SVQRCGPPRE LPKISAVSNE VFEVYKVNVD FHHLHNMFLR SERARMAKLY 
YAAPDPLNQK AWFLGLPREQ KGTGYHINDI EVKRRASPIF VAWHSIQHVF GGGGYISIFL 
SQDWPTQLTW VGESGRKLIQ INEQTLRDAK SAFLALLNQF GWKPQRVWP