Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pcal_1277 |
Symbol | |
ID | 4909243 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum calidifontis JCM 11548 |
Kingdom | Archaea |
Replicon accession | NC_009073 |
Strand | + |
Start bp | 1184569 |
End bp | 1185138 |
Gene Length | 570 bp |
Protein Length | 189 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 640125030 |
Product | CRISPR-associated exonuclease Cas4 family protein |
Protein accession | YP_001056167 |
Protein GI | 126459889 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1468] RecB family exonuclease |
TIGRFAM ID | [TIGR00372] CRISPR-associated protein Cas4 |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0341356 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCACCT GCATTAACCC ATCCCTAATC CGACAGTACC TCTACTGTCC AGCCGCCGCC TACTACATCG CCACAGGCCT AGCCGAGCCC CCCACCGAGC GGATGCGCCG AGGAAAGGAG ATCCAGCGAG AAGCCATAGA GGCCATAGCC AAGGCCCTAC AAGCCGAGAA GGTAGAACAC AGCCCACGCC TAGAGGGCTG GGGAATATGC GGCGTAGTAG ACGCCGTCCT CTGGATACGC GGCAGGCCAG CCCCCCTCGA AGTGAAGTAC ACCACCCCAC CCCCCAAAAC CCCACTACCC CACAAAGCGC AGGCCGCCGC CTACGCCCTC GCCGCCCAAG CCACCTACCG CAAAGCCGCA ACACACGCCT ACATATACTA CGCCGAGGCC GGAGAGGTAA GGACAGTACA ACTCACCCAA GACCTAACCC ACCTCGTCCT CCAAACCGCC GCCCAAGTAG CCAAAATACT AAAAGGCTGG ACCCCACACC CCCAGCCCAC CCCCAAATGC CAAGGCTGCT GGTACAAAAA ATACTGCGGC CACACCCAGA CACAAGTAGA CACAATATAA
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Protein sequence | MSTCINPSLI RQYLYCPAAA YYIATGLAEP PTERMRRGKE IQREAIEAIA KALQAEKVEH SPRLEGWGIC GVVDAVLWIR GRPAPLEVKY TTPPPKTPLP HKAQAAAYAL AAQATYRKAA THAYIYYAEA GEVRTVQLTQ DLTHLVLQTA AQVAKILKGW TPHPQPTPKC QGCWYKKYCG HTQTQVDTI
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