Gene Pcal_1277 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1277 
Symbol 
ID4909243 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1184569 
End bp1185138 
Gene Length570 bp 
Protein Length189 aa 
Translation table11 
GC content60% 
IMG OID640125030 
ProductCRISPR-associated exonuclease Cas4 family protein 
Protein accessionYP_001056167 
Protein GI126459889 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.0341356 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACCT GCATTAACCC ATCCCTAATC CGACAGTACC TCTACTGTCC AGCCGCCGCC 
TACTACATCG CCACAGGCCT AGCCGAGCCC CCCACCGAGC GGATGCGCCG AGGAAAGGAG
ATCCAGCGAG AAGCCATAGA GGCCATAGCC AAGGCCCTAC AAGCCGAGAA GGTAGAACAC
AGCCCACGCC TAGAGGGCTG GGGAATATGC GGCGTAGTAG ACGCCGTCCT CTGGATACGC
GGCAGGCCAG CCCCCCTCGA AGTGAAGTAC ACCACCCCAC CCCCCAAAAC CCCACTACCC
CACAAAGCGC AGGCCGCCGC CTACGCCCTC GCCGCCCAAG CCACCTACCG CAAAGCCGCA
ACACACGCCT ACATATACTA CGCCGAGGCC GGAGAGGTAA GGACAGTACA ACTCACCCAA
GACCTAACCC ACCTCGTCCT CCAAACCGCC GCCCAAGTAG CCAAAATACT AAAAGGCTGG
ACCCCACACC CCCAGCCCAC CCCCAAATGC CAAGGCTGCT GGTACAAAAA ATACTGCGGC
CACACCCAGA CACAAGTAGA CACAATATAA
 
Protein sequence
MSTCINPSLI RQYLYCPAAA YYIATGLAEP PTERMRRGKE IQREAIEAIA KALQAEKVEH 
SPRLEGWGIC GVVDAVLWIR GRPAPLEVKY TTPPPKTPLP HKAQAAAYAL AAQATYRKAA
THAYIYYAEA GEVRTVQLTQ DLTHLVLQTA AQVAKILKGW TPHPQPTPKC QGCWYKKYCG
HTQTQVDTI