Gene Pcal_1178 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_1178 
Symbol 
ID4910034 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand
Start bp1095853 
End bp1097634 
Gene Length1782 bp 
Protein Length593 aa 
Translation table11 
GC content62% 
IMG OID640124932 
Productthiamine pyrophosphate binding domain-containing protein 
Protein accessionYP_001056069 
Protein GI126459791 
COG category[C] Energy production and conversion 
COG ID[COG4231] Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits 
TIGRFAM ID[TIGR03336] indolepyruvate ferredoxin oxidoreductase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAACTCC TACTGTTGGG GAACGAGGCA ATTGCCTACG GGGCGCTCAG CGGAGGCCTA 
GCCGTAGCCA CGGCATATCC AGGCACGCCC TCTACAGAGG TGTTAGAGAC AATAGAGGAG
TTTAAGGACC GCTATACACA CTGGGCGGCC AATGAGAAGA CGGCGTTTGA AATAGCCTAC
GGAGCCGCCC TAGCTGGGGC AAGGGCCCTG GTGGCTATGA AGCACGTGGG GCTGAACGTG
GCCGCAGACC CCCTCCACAG CGCGGCTTAC ACAGGCGTGG AGGGGGGCCT CCTAGTGGTG
TCGGCAGACG ACCCGTGGAT GTACTCTTCT CAGAATGAGC AAGACACCAG GTGGTACGGC
GTGCAGGCAT ACGTGCCCGT CCTCGAGCCC TCTAGCCCGG CCGAGGCCTA CGCCTACGCC
AAGGCGGGGC TAGAGCTCAG CGAGAGGGTC AAGCAACCCG TCTTGCTTAG GAGCGTGACG
AGGGTGAGCC ACGTGAGAGC GCCCGTGGAG GTGGAGCCCC CTGCGCCTCC CAAGTGGGGC
AACTTCGTCA GAGATGTGAA GCGCTTCACG CTTGTGCCAG CCCATGCGCG GGAGAGGAGG
AGGGAGCTGG TGGAGAAGTG GGAGAAAATG CGGGAGTGGG CCGAGCAGTA CATGACTGTG
GAAGACGGCT GCGACAAGGC CGTGGTGGTG ACAGCGGGGG TAGCTTATAC ATATGTAAAA
GAGGCGTTGA AGAGGCTGGG CACCTGCGCC ACTGTGGTGA AGCTGGGGAT GTCTGTGCCG
CTCCCCCGGA AGATCTCCGA GGTGGTGAAG GGAGAGGCCA TAGTGGTAGA GGAGGGGGAC
CCAGTGGTGG AGACTCAGCT CAGGGCACTC GGCGTATCCA CCAGGGGAAA GCTGGACGGC
TATTTTCCGC GGTACGGCGA ATTGACCACG GGGAAGGTGG CCGCTGGCAT AGCCAAGGCG
CTTGGCCTCC CCTACTCCCC GCCCGCGGTC TACAAGTCGC CCATGGCGCC TCCCCCAAGG
CCGCCGTCTC TATGCCCAGG CTGCCCCCAC ATGGCCACCT TCTACGCGCT TAAGGTAGCC
ACGGCTGGGC TAAACCCAGT CTGGTCTGGT GACATAGGCT GCTACTCGCT GGGCTTAAAC
ACGGGCCAGC AGGACATAAT AACGCACATG GGCTCCTCTG TGGGCCTTGG CCACGGCGTC
GCCGTAGCGG CAAAGCGGTT TGTAGTAGCC ACAGTGGGCG ACTCCACCTT CTACCACGCC
GTCCTCCCCC AGCTTGTGGA CGTAGCCGCC AAATCTGTCC CCATGTTGAT CGTGGTCATG
GACAACGCCT ACACGGCCAT GACGGGCGGC CAGCCGAGCC CAAGCAGATT TCTGCCAGTG
GAGAAGATAA CCGAGGCCTT TGGCATACCC ACCTTCGTAG TAGACCCCGT GTATGTCAAG
TCGTCTATTG AGACTGTGAA AAAGGCGGTG GAGGTGGTGA AGAGCGGCAG GCCTGCGGTC
GTCGTCTCAA GGAGGCCCTG CACTCTCATG GCGGTGAGGA AGGCGCGCCG TAGCGGCGTA
AGGCTCCCGA GGTACTTCGT CGACGTGGAC AAGTGCGTCT CTTGTGGAAT TTGCTACAAC
GTGTTGAAGT GTAGCGCCAT TTCCAAGGCG TCTGGCGGAA AGGCGTATAT AGACCCCGCT
CTCTGCGTCG GATGCGGAGT CTGCGCCGAG GTGTGCCCCG TGGGGGCAAT AAAGGGAGAG
GGAGACAGGG CGAAGTGGCT GGAGGTATGG AGACAGGCAT AG
 
Protein sequence
MKLLLLGNEA IAYGALSGGL AVATAYPGTP STEVLETIEE FKDRYTHWAA NEKTAFEIAY 
GAALAGARAL VAMKHVGLNV AADPLHSAAY TGVEGGLLVV SADDPWMYSS QNEQDTRWYG
VQAYVPVLEP SSPAEAYAYA KAGLELSERV KQPVLLRSVT RVSHVRAPVE VEPPAPPKWG
NFVRDVKRFT LVPAHARERR RELVEKWEKM REWAEQYMTV EDGCDKAVVV TAGVAYTYVK
EALKRLGTCA TVVKLGMSVP LPRKISEVVK GEAIVVEEGD PVVETQLRAL GVSTRGKLDG
YFPRYGELTT GKVAAGIAKA LGLPYSPPAV YKSPMAPPPR PPSLCPGCPH MATFYALKVA
TAGLNPVWSG DIGCYSLGLN TGQQDIITHM GSSVGLGHGV AVAAKRFVVA TVGDSTFYHA
VLPQLVDVAA KSVPMLIVVM DNAYTAMTGG QPSPSRFLPV EKITEAFGIP TFVVDPVYVK
SSIETVKKAV EVVKSGRPAV VVSRRPCTLM AVRKARRSGV RLPRYFVDVD KCVSCGICYN
VLKCSAISKA SGGKAYIDPA LCVGCGVCAE VCPVGAIKGE GDRAKWLEVW RQA