| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1043 |
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| Symbol | |
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| ID | 4909074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pyrobaculum calidifontis JCM 11548 |
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| Kingdom | Archaea |
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| Replicon accession | NC_009073 |
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| Strand | + |
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| Start bp | 981394 |
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| End bp | 982353 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640124795 |
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| Product | putative mRNA 3-end processing factor |
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| Protein accession | YP_001055934 |
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| Protein GI | 126459656 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0008566 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCGCCAGT GCGTGAATAT ATACTGGAAC CGCGGCATAT ATGTCGAGGG CAGGAGGGCG
AGGTTTGTTG TCGATCCCGT GGGCCCGGTG GAGGGGCCTG TGGACTTCGT TCTCGTGACC
CACGGCCACA GCGACCACGT CTCTCGGTAC ATGTTTAAAC ACTTGGTGGT CGCCACGGCG
GAGACGTTTA AGGCCATTGA GGTTAAATTT GGCGGCGTGC CTCCGAGGCG GCTCGTGACG
GCGCCCGGCA GAGTCTTTGA GGTAGGCGGC GTGGAGGTGG CCGTGTTTGA CGCAGGGCAC
ATCGTGGGTA GCGTGATGTA CTTAGTGGAG CTGGACGGGG TTCAGATCTT AATTACGGGC
GACTACAGCG TCTACGGCTC AATACTCACA GACGGGGCAG AGCCCGTGGA AAAGCCCGAC
ATACTCATCA CAGAGGCCAC CTATGGGGAC CCGGCCTACG TATTCCCCAA CAAGGCCGAT
GTGTACAACG AACTCCTCGA CCTAGTGGAG AGACATGCGG GGGAGAGGGG CGTGGCCATT
GCGGCATATC CCCTGGGCAA GGCACAGGAG GTCTCTGCAC TGCTCGGGAG CAGGGCCAAG
GCCCACCCCC TCGTGGCACG TTACAACAGG GCCTTGGGCA TTAGGAGCGG CACCGACGGC
GACGTGGTCG TAGTGCCCAG CCTCAAGGCG GCGCCTCCAG GCTTTGTCAA AGTGGAGGCG
ACGGGGTGGT ACTCCGACGA AGAGTACAGA AGAAGGAGCG CCGAGAGGGG GATATATGGC
GTGCCCCTCA GCGACCACAG CGATTATGTG GGACTTATAG AGTTTGTCAA CGCGTCGGCG
CCTAAGCTTG TATACACTGT ATACGGCTTT TCAGAGCGCC TTGCCCGTAG CCTTAGGCGG
CTTGGGCACA GGGCTTACAC AATACCAGGC GCCGCTGGGC TGTCCAGATT TCTGAAATAG
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| Protein sequence | MRQCVNIYWN RGIYVEGRRA RFVVDPVGPV EGPVDFVLVT HGHSDHVSRY MFKHLVVATA
ETFKAIEVKF GGVPPRRLVT APGRVFEVGG VEVAVFDAGH IVGSVMYLVE LDGVQILITG
DYSVYGSILT DGAEPVEKPD ILITEATYGD PAYVFPNKAD VYNELLDLVE RHAGERGVAI
AAYPLGKAQE VSALLGSRAK AHPLVARYNR ALGIRSGTDG DVVVVPSLKA APPGFVKVEA
TGWYSDEEYR RRSAERGIYG VPLSDHSDYV GLIEFVNASA PKLVYTVYGF SERLARSLRR
LGHRAYTIPG AAGLSRFLK
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