| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_1031 |
|---|
| Symbol | |
|---|
| ID | 4908903 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 967091 |
|---|
| End bp | 968365 |
|---|
| Gene Length | 1275 bp |
|---|
| Protein Length | 424 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 640124783 |
|---|
| Product | glutamate dehydrogenase (NAD) |
|---|
| Protein accession | YP_001055922 |
|---|
| Protein GI | 126459644 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0334] Glutamate dehydrogenase/leucine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.00282802 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAGCACAA CCTACATAGT ATCAGACTTC CTAATCAATA CGCTACTGAC AATTAAGCGA
GGAGTAGAAC TGGCCGGACT ACCGCCAGAA TTCTACGAAG CACTAGAAAA GCCAAAGAGA
ATACTAGTGG TAAACATACC GGTGAAAATG GACGACGGAA AGATAAAGTA CTTTGAGGGC
TACCGTGTTC AGCATAATGA TGCTCTTGGT CCTTTTAAGG GTGGTATTCG TTTTCATCCG
GAGGTGACTT TGGCTGATGA TATTGCTCTT GCCATGCTTA TGACGCTTAA GAATAGCCTC
GCGGGCCTGC CCTACGGCGG GGCTAAGGGG GCTGTGAGAG TGGACCCGCG GAGGCTCTCT
AGGCGGGAGC TTGAGGAGTT GGCTAGGGGC TACGCGCGGG CCGTGGCGCC TCTCATAGGC
GAGCAGTTGG ACATCCCAGC CCCAGACGTG GGGACAGACT CCCAGGTAAT GGCCTGGATG
GTAGACGAGT ACTCAAGGCT TGTGGGAAGA AACGCCCCAG CAGTCTTTAC CTCAAAGCCC
CCAGAGCTCT GGGGAAACCC AGTCAGAGAA TACTCCACAG GCTTCGGCGT GGCAGTAGCG
GCAAGAGAAG TCGCGAAGAG GCTATGGGGA GGAATAGTGG GAAAAACCGC GGCTGTGCAA
GGCTTAGGCA ATGTGGGCAG ATGGGCCGCC TATTGGCTTG AGAAAATGGG CGCCAAAGTC
GTGGCAGTTT CGGACGTCAA CGGCGTGGTA TACAGAGAGA GGGGGTTAGA CGTGGATCTC
ATTAGAGAAA CAAAGGCAAA AGGCCCGCAG CTACTCGAAA TGATAAGCCA GAAAAACGGC
GTTGAAATTG TGAAAAACCC AGACCAGATC TTCTCCCTAG ACGTGGACAT CTTGGTGCCT
GCCGCTATTG AGAATGTGGT TAGGGAGGAC AATGTGGATG GGGTTAGGGC TAGGTTGGTG
GTGGAGGGGG CTAATGGGCC CACTACCCCT GGGGCTGAGA GGAGGCTGTA TGAGAGGGGG
GTTGTGGTGG TGCCGGATAT CTTGGCTAAC GCTGGCGGCG TGATTATGTC TTATCTGGAG
TGGGTGGAGA ATTTGCAGTG GCTGTTTTGG GATGAGGAGG AGACTAGGAG GAGGCTTGAG
GCCATAATGT CCAACAACGT GGCTAGAGTA TACGCCAGGT GGGAGAAGGA GAAGAGCTGG
ACCATGAGAG ACGCCGCAGT AGTCACAGCC CTAGAAAGAA TATACAACGC CATGAAGACA
AGGGGGTGGA TCTAG
|
|---|
| Protein sequence | MSTTYIVSDF LINTLLTIKR GVELAGLPPE FYEALEKPKR ILVVNIPVKM DDGKIKYFEG
YRVQHNDALG PFKGGIRFHP EVTLADDIAL AMLMTLKNSL AGLPYGGAKG AVRVDPRRLS
RRELEELARG YARAVAPLIG EQLDIPAPDV GTDSQVMAWM VDEYSRLVGR NAPAVFTSKP
PELWGNPVRE YSTGFGVAVA AREVAKRLWG GIVGKTAAVQ GLGNVGRWAA YWLEKMGAKV
VAVSDVNGVV YRERGLDVDL IRETKAKGPQ LLEMISQKNG VEIVKNPDQI FSLDVDILVP
AAIENVVRED NVDGVRARLV VEGANGPTTP GAERRLYERG VVVVPDILAN AGGVIMSYLE
WVENLQWLFW DEEETRRRLE AIMSNNVARV YARWEKEKSW TMRDAAVVTA LERIYNAMKT
RGWI
|
|---|
| |