Gene Pcal_0841 details

Gene Information

• Locus tag: Pcal_0841
• ID: 4908830
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pyrobaculum calidifontis JCM 11548
• Kingdom: Archaea
• Replicon accession: NC_009073
• Strand: +
• Start bp: 801344
• End bp: 803332
• Gene Length: 1989 bp
• Protein Length: 662 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 640124590
• Product: 3-hydroxyacyl-CoA dehydrogenase, NAD-binding
• Protein accession: YP_001055733
• Protein GI: 126459455
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1024] Enoyl-CoA hydratase/carnithine racemase; [COG1250] 3-hydroxyacyl-CoA dehydrogenase

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 28
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCAAAAG TTGCAGTAAT AGGAGCTGGC ACGATGGGCC ATGGAATAGC TGAGCTGTTT 
GCAATTGCGG GCTACGAGGT TGCCCTCGTC GACGTGGCGG AGGACTACCT CAAAAGGGCT 
TTGCAGAACG TTGAGTGGTC TCTCAAGAAG CTTGCCGAGA AGGGGCAGAT CAAGGAGGAC 
CCCTCCGTGG TGCTGTCGAG GGTTAAACCA ATAGTCAACG ACGTGTGCAA GGCCGTGGAG 
GGGGCAGAGC TGATGGTTGA GGCCGTTGTG GAAGACATCG AGGTCAAGAG GCGTGTCTTT 
GCCGAGGCCG ACCGTTGCGC CCCGCCGGAG GCAATCTTAG CCACCAACAC ATCTTCGCTC 
CCCATTACGG AGATCTCGGA GGCCGTGAGG CCAGAGAGGA GGAGCAAGGT AGTGGGCATG 
CACTTCTTCA ATCCGCCGGT GTTGATGCCG CTTGTGGAGG TGATAAAGGG CGCCTATACA 
AGCGACGAGA CTGTGAAAAA GATTGTGGAG TACGCCTCTA AGCTAGGCAA GCAGACCGTC 
ATAGTGAACA AGGACGTACC CGGCTTCATT GTGAACAGAA TCTTGGCGAG GGTAAACGAT 
GCGGCGTGTT GGATGGTGGC CAGAAAAGAG GCCACGGTGC AGGAGGTGGA CTCCGCGCTT 
ATGTACAAGG CCGGCTTGCC CATGGGCGCG TTTATCCTAC TAGACTACAC AGGAATAGAC 
GTGGCGTGCT TCATTGGAGA CGCCATGTCG AAGAGGGGCT TTAAGACGCA CCCATGCCCG 
CTGATTGTAG AGAAGTGCCA GCAGAAGAAG TTCGGCGTCA AGACAGGCGA GGGCTTCTAC 
AAGTACCCCG CGCCGGGCAA ATTCCAGTGG CCTGAGGTTC CCAAGAGCGC TGGCGAGCGG 
ATAGACGTCG TCGCTCTACT GGCCCCCGCG ATAAACGAAG CCGCCTACCT CCTGCGAGAG 
GGCATAGCAA CGCGCGAAGA CATAGACAAA GCAGTAAAGC TCGGGCTCAA CTGGCCCAAG 
GGCCCCCTGG AGTTTGCAGA CGAGTTCGGC ATAGACACGG TGGTTAAGGC GCTCGGAGAG 
TGGAGACAGA AGACCGGCTT CGAGGAGTTT GAGCCCGACC CGCTACTCCG CGACATGGTG 
GCCAAGGGGA AGCTTGGGAA AAAGACTGGG GAGGGCTTCT ACACGTATGT AAAAGCTGAA 
GAAAAGAAGT TGGAAACCAT AATAATCAGG TACGAGCCCG GCGTAGCATG GATTATCTTG 
AATAGGCCAG AGAGACTCAA CGCAATAAAT CCAAAGATGG TGGAAGAGCT GTGGAAAGCC 
ATCGACGAAA TTGAGCAAAT GGACTACGAC AAGGTGCGCG TCGTCGTCAT CACAGGCACT 
GGGAGGGCCT TCTCCGCAGG CGCAGACGTG ACAGCCTTTA TGGGCGCCAC GCCTGTCACA 
ATATTCAAGA CTTCGAGGAA GTTGCAGATA CTGTTCGAGA GAATTGAGGC GCTGGATAGG 
CCCGTGATCT GCGGCATAAA CGGCTACGCC CTAGGCGGAG GACTTGAGCT TGCCATGTCC 
TGCGACATTA GAATAGCCGC GGATACCGCA GAGCTAGGCC AGCCTGAGAT AAACCTAGGC 
TTTATCCCAG GCGCTGGGGG CACGCAAAGG CTGGCGAGAC ACATCGGGAG AGATAGGGCT 
AAGGAGCTGA TATTCACTGG CGACAGAATC CCGGCCCGCG AGGCTGAGAG GCTAGGCCTT 
GTGAACAGAG TAGTCCCGGC CGACAAGTTT GAGCAAGAGC TAAGGGCCTT CGCCAATAAG 
CTGGCCGAGA AGCCGCCTTT GGCGCTGGCG ATGGCCAAAT ACGCAATAAA CTTCGGCATA 
GAGGCTCCGC AATGGGTCGG CATGATGCTT GAGGCGGCTC AATTCGGCCT ACTCTTCACC 
ACCGAGGACG TCATAGAGGG CGTATCGGCG TTTCTACAGA AGAGGAAGCC GCAGTTCAAG 
GGGAAGTAA 

 

Protein sequence

MPKVAVIGAG TMGHGIAELF AIAGYEVALV DVAEDYLKRA LQNVEWSLKK LAEKGQIKED 
PSVVLSRVKP IVNDVCKAVE GAELMVEAVV EDIEVKRRVF AEADRCAPPE AILATNTSSL 
PITEISEAVR PERRSKVVGM HFFNPPVLMP LVEVIKGAYT SDETVKKIVE YASKLGKQTV 
IVNKDVPGFI VNRILARVND AACWMVARKE ATVQEVDSAL MYKAGLPMGA FILLDYTGID 
VACFIGDAMS KRGFKTHPCP LIVEKCQQKK FGVKTGEGFY KYPAPGKFQW PEVPKSAGER 
IDVVALLAPA INEAAYLLRE GIATREDIDK AVKLGLNWPK GPLEFADEFG IDTVVKALGE 
WRQKTGFEEF EPDPLLRDMV AKGKLGKKTG EGFYTYVKAE EKKLETIIIR YEPGVAWIIL 
NRPERLNAIN PKMVEELWKA IDEIEQMDYD KVRVVVITGT GRAFSAGADV TAFMGATPVT 
IFKTSRKLQI LFERIEALDR PVICGINGYA LGGGLELAMS CDIRIAADTA ELGQPEINLG 
FIPGAGGTQR LARHIGRDRA KELIFTGDRI PAREAERLGL VNRVVPADKF EQELRAFANK 
LAEKPPLALA MAKYAINFGI EAPQWVGMML EAAQFGLLFT TEDVIEGVSA FLQKRKPQFK 
GK