| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0686 |
|---|
| Symbol | |
|---|
| ID | 4910121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 648066 |
|---|
| End bp | 648761 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640124435 |
|---|
| Product | rhomboid family protein |
|---|
| Protein accession | YP_001055578 |
|---|
| Protein GI | 126459300 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0078809 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGGCTTTAC CTATCCGCGA TATAAATCCG ACGAGGAGCT TCCCCTTTGT GACTAAGGCT
CTCGTCTTTG TAAACATTGC CGTGTTTATA TACCAGATAC TCGACCCCGC AATCACGGCG
AAGTATGCCT TTGTCCCAGA AAAAGCCTCC TCGGAGCTCT ACCGCTGGGT AACACACATG
TTTCTCCACA GCGGCATAAT GCACATAACT GGAAATATGA TTTACCTCTG GGTATTCGGC
GACAACGTGG AAGACTACTA CGGACACCTC CGCTTCCTCT TCCTATACCT CTTCTGGGGA
GTGGCGGCTG CCTTCGCCCA CTGGGCGTCG ACCATCGCCC AGGCGTCGAT GATCGAGAAC
CCCTACCTCA AGAGTTACCT CCTAAAGATG CCGGCGGTAG GCGCCTCCGG GGCCATAAGC
GGAGTTCTTG GGGCATATCT TGTGCTGTAT CCCCGTGCCA GAATTCTCAC CTTGACCTTC
TTCATCGTGA TTACGTTGAT AGAGGTGCCA GCGTGGGCGT ATATAGGCTT CTGGTTCCTG
TATCAGCTTA TCTACGGATT CATAGACTTT TTTGCCCTGC AGAAGGTAGA GGTCGCATAC
TTTGCCCACA TAGGGGGATT CGTCGCGGGG GCATTAACCG CGCTGGCCAC GAGGGGCCGT
AGGAGGAGGG TTGTGTATTA CTACTATTGG CCGTAG
|
|---|
| Protein sequence | MALPIRDINP TRSFPFVTKA LVFVNIAVFI YQILDPAITA KYAFVPEKAS SELYRWVTHM
FLHSGIMHIT GNMIYLWVFG DNVEDYYGHL RFLFLYLFWG VAAAFAHWAS TIAQASMIEN
PYLKSYLLKM PAVGASGAIS GVLGAYLVLY PRARILTLTF FIVITLIEVP AWAYIGFWFL
YQLIYGFIDF FALQKVEVAY FAHIGGFVAG ALTALATRGR RRRVVYYYYW P
|
|---|
| |