| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0672 |
|---|
| Symbol | |
|---|
| ID | 4909729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 634363 |
|---|
| End bp | 635820 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640124421 |
|---|
| Product | glycoside hydrolase family protein |
|---|
| Protein accession | YP_001055564 |
|---|
| Protein GI | 126459286 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1449] Alpha-amylase/alpha-mannosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.565437 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTATAATG CGCAAACTGT TTTAACTACA CAGCGGGGTG TCCATGTGAT AGTATTTCAC
CTACACCTCT ACCAGCCCGA GCGCGCAGAT CCCTGGCTCG AGATCATCTT CCCCGAGCCC
TCTGCCTCGC CCTTTAGGCA CTGGAACGAG CGCGTGTCGC ACGAGTGCTA CGAGCCCAAC
GCGGAGTTGG GCAACTACAA GTGGGTCAGC TTCGACGTGG GCCCCACGCT GTTGACCTGG
CTACGGCGGA GTAGGCCGGT GGTGTACAAT GCCTTGCTCG AGGGCGACAA GGCGGGGCTG
GAAAGGTGGG GCCACGGCAA CGCCATAGCG CACCCCTACT ACCACGTGAT CCTGCCCCTA
GTCCCCAGGC GAGACCGAGA GGTGTTAATC CACTGGGGCG TGGAGTATTT CAAGAGGCAC
TTCAAGAGGA GCCCAGAGGG GATGTGGCTC CCCGAGATGG CCGTGGACCT CGAGACGCTG
GAGGTTCTGG CCGACTACGG CATATCTTAC ACAGTCCTCT CCCAAGGCCA GGTGAAGGGA
GGGAGGGCCG GGGGGCCCTA CAAGGTGGTT CTGCCCAGCG GGCGCTCCAT CGCCGTCTTT
ATACGCAACG ACGCGGTATC CAACGCCCTG GCCTTCCAAG GCTTTGAAAA ATTCGCCGAG
ACACTCAGAG GCGTAGAGGG CGACGTAGTA GTGGCCCTAG ACGGGGAGAC CTTTGGACAC
CACATAAAAG GCGGCGACAA GCTCCTCGCC GACTTCATAT CCCGGCACAA GGACCACCTG
GCCAACCTCG GCTGGCTCTA CGAGAGGGGG GTCAAGGGAG AGGTAGAGAT CGTGGAAAGG
ACGTCGTGGA GTTGCCCCCA CGGGCTGGGC CGCTGGAGCA GAGACTGCGG ATGCGACGGG
CCTGCGCCCT GGAGAGAGGG ACTGAGGAAG CTAGTTGACT GGGTTGGGGA GGCGGTGGAC
AAGGCCTTTG AGGAGAGGCT GGGCCCAGGG GGGTGGGACA CGTTGAAGCG CTACATAGAC
GTGTTGATGG GCGGCGACCG CGGGGGATAC ACCACGGAGC AGTTGAAGCT TTTAGAGGCC
CAGCGGGCGA AGCTCGCCGC TAATACGAGC GACGCTTGGT TCTTCGCGAG GGTGGGCATA
GAGTTCGGGA TAGCCGTCAA GTGGGCCCTG AGGGCAGTGG AGTTGCTAGA CGACCCAAGC
CCCGTCGAAG AGTTCATGCG CCGGCTAGAC GAGATTGCGA TAGACGGCAA GACGGCCCTG
GCCCTATGCC CCCGCGTGAG GGGCCCCCTC ATGGCCGCCA TGATGTACGT AGCCAGAGCC
ACCGCCGGCT TCCAGGAGGA GAGGGTGGGG CCCTACATAG TGAAGCCCAT CAACGACGAA
TTCGAAATCG TGGACGAGAG GACCCGCGAA GTCTTTAGAT TTCGACACGA CCTCTTATGG
GGTTTCGAAA AAATTTAA
|
|---|
| Protein sequence | MYNAQTVLTT QRGVHVIVFH LHLYQPERAD PWLEIIFPEP SASPFRHWNE RVSHECYEPN
AELGNYKWVS FDVGPTLLTW LRRSRPVVYN ALLEGDKAGL ERWGHGNAIA HPYYHVILPL
VPRRDREVLI HWGVEYFKRH FKRSPEGMWL PEMAVDLETL EVLADYGISY TVLSQGQVKG
GRAGGPYKVV LPSGRSIAVF IRNDAVSNAL AFQGFEKFAE TLRGVEGDVV VALDGETFGH
HIKGGDKLLA DFISRHKDHL ANLGWLYERG VKGEVEIVER TSWSCPHGLG RWSRDCGCDG
PAPWREGLRK LVDWVGEAVD KAFEERLGPG GWDTLKRYID VLMGGDRGGY TTEQLKLLEA
QRAKLAANTS DAWFFARVGI EFGIAVKWAL RAVELLDDPS PVEEFMRRLD EIAIDGKTAL
ALCPRVRGPL MAAMMYVARA TAGFQEERVG PYIVKPINDE FEIVDERTRE VFRFRHDLLW
GFEKI
|
|---|
| |