| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0605 |
|---|
| Symbol | |
|---|
| ID | 4909076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | - |
|---|
| Start bp | 567941 |
|---|
| End bp | 569884 |
|---|
| Gene Length | 1944 bp |
|---|
| Protein Length | 647 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640124353 |
|---|
| Product | type III restriction enzyme, res subunit |
|---|
| Protein accession | YP_001055498 |
|---|
| Protein GI | 126459220 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCGTT TCTGCGTTGT CATAAACGGC GTTGCAGTGT ATAGAGAGTG GCAGTGGGAC
AAAATAGTTA AAGTAAAAGA GGAGCTGAAG CGGCTTGGCT TTAAGTGGGA TGGCTCTTGT
TGGTCTACTA AGACTCGGAA CCTCGCTGTG TTGAGTGAGG TGAGGCGGTT GCTGAATTTA
ACCGGTGAAG AGTACCTCTC TCTTCTCTCC GCATTCTCAT TTGACGTGTC TGGCGGCGCT
GTGGCTATTT CTGGCCCTCT TCCGGAGGAT CTAAGGCGGC ACGTCGTAGC GTCAGACGGC
GACGTCCATG TAGTTTCGCT TTCGGGGTTT TTGAGGAGTT TTGTAATGGA GAGCCGGGAG
ATTTCCCAAG TGGAGAGTTT TGAGGAGTTT GTGGACTTGG GCGTCAAGAG GCTTCTGGAG
TTGCTCAAGG GGGCACAAGT GTGGGGGAAC TTGGACGAGG CTGTTAAAAA CGCGAGGGAA
ATTGTTCTTG CGTCTGATAG GCTTAGAGAG GCGTTTAACA GGCGGAGGAG TTGGCGAGTT
GCCGTGGTGG GGCCTAACTA CGCTAAGTTG AATTTCTTGG CCTCTGGCCT CTTGAAGAGG
CTGGCAGAGC TTAAGCTGAA ATACAACGTG GTTAAGAAAG ACGGCGAGTT AGAAGAAAGA
GACTTGAAGC TCGTCAAAGT GGAGAAGGGC GACACGTATT TACTTAAGTT CCCTGTCTTC
GTGAGAGATA GGGTTGTAAA AATCCTAAGG GAGTTGGGCT ACGTAGCCCA ACTGGCTGAG
GTGGAATACC CAAAGGTGAG CTACAAGAGG GAGTTTTCAC TATTCCCGTT TCAGGCCGAA
GCTGTGGAAA ACTGGGTTGC CCACGGCATG AGGGGCACCG TGATTATACC AACTGGAGGG
GGCAAGACAT TTGTGGCATT GGAGGCCATG TACAGGGCTG GAGTGTCGGC CCTAGTTCTA
GTTGTCACTA GAGAGCTGGC GTTGCAGTGG GTTGAGCGTA TTAGAAAGTT CCTCGGCGTA
CAGCCGGGCA TGTTGGGCGG CGGAGAGAGG AACGTAAGAG ATGTCACTGT GGCGATCTAC
AACTCGGCTG TAAAGTACGT GGACGAGTTA GTGGGCCGCT TTGGCCTAGT CGTATTCGAT
GAGGCGCATC ACGTGCCCGC AGAGACGTTT AAAGAGGTTG CGCTTAACAT AGATTCTCCG
TTTAGACTCG CCCTCTCCGC GACACCAGAG AGGGAGGATG AAAACGAGCA CTTGATATTT
GAGGCGGTTG GGCCGCCTGT TTATAGGGCG TCGTATCGAT CTATGATTGA GTCTGGGCTA
GTGGTTCCAG TAGAACACTA CCGCGTTTAT GTGAAAATGG ACGAAGAAGA GGCGCGCGCC
TACGCCTCGT TACCTCCTGA CAATGCAATT TTGTTGCGCA ACGTCGCCGC CAAAAGCAAG
GCGAAGATCC CAGTCGTCCT ACAGATTGTG TCTAGGGAAG TTGCACTTGG CTCAAAGGTC
TTAGTCTTTA CGCAGTTCAT TGACCAAGCC GAGGAGTTGT ACAAGAGGCT CAGAGAGGCG
GGTATACAGG CCGAGTTAAT TACCTCGGAA GAGGGGGGGC GCGAAGTTGC CTTAAGAAGG
TTTAGCGCTG GGAAGAGTCG GGTGGTTGTA ACAACCACAG TCCTAGACGA GGGGGTGGAT
GTGCCAGACG CAGATGTGGC AGTCGTGGTC AGCGGCACTG GATCTAGGCG TCAGATGATC
CAGCGGGTGG GCAGAGTGGT TAGGGCGTCG CCGGGGAAGA AGGTGGCGAG GGTCTACGAA
ATAGTCACGC GGGGAACGAT AGAGGAGGCG TTGTCTGAGG CTAGACACTT CGACGACTTT
ATAGAGGAGG CAGTGTGTAG GAGAGTTCTT GAGAAGGAGT TGGCCGCGCT GTTAAAGAAG
CCGACGCTGT CTAACTGGTT TTAA
|
|---|
| Protein sequence | MPRFCVVING VAVYREWQWD KIVKVKEELK RLGFKWDGSC WSTKTRNLAV LSEVRRLLNL
TGEEYLSLLS AFSFDVSGGA VAISGPLPED LRRHVVASDG DVHVVSLSGF LRSFVMESRE
ISQVESFEEF VDLGVKRLLE LLKGAQVWGN LDEAVKNARE IVLASDRLRE AFNRRRSWRV
AVVGPNYAKL NFLASGLLKR LAELKLKYNV VKKDGELEER DLKLVKVEKG DTYLLKFPVF
VRDRVVKILR ELGYVAQLAE VEYPKVSYKR EFSLFPFQAE AVENWVAHGM RGTVIIPTGG
GKTFVALEAM YRAGVSALVL VVTRELALQW VERIRKFLGV QPGMLGGGER NVRDVTVAIY
NSAVKYVDEL VGRFGLVVFD EAHHVPAETF KEVALNIDSP FRLALSATPE REDENEHLIF
EAVGPPVYRA SYRSMIESGL VVPVEHYRVY VKMDEEEARA YASLPPDNAI LLRNVAAKSK
AKIPVVLQIV SREVALGSKV LVFTQFIDQA EELYKRLREA GIQAELITSE EGGREVALRR
FSAGKSRVVV TTTVLDEGVD VPDADVAVVV SGTGSRRQMI QRVGRVVRAS PGKKVARVYE
IVTRGTIEEA LSEARHFDDF IEEAVCRRVL EKELAALLKK PTLSNWF
|
|---|
| |