Gene Pcal_0546 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0546 
Symbol 
ID4909024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand- 
Start bp518375 
End bp519016 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content49% 
IMG OID640124293 
ProductCRISPR-associated exonuclease Cas4 family protein 
Protein accessionYP_001055439 
Protein GI126459161 
COG category[L] Replication, recombination and repair 
COG ID[COG1468] RecB family exonuclease 
TIGRFAM ID[TIGR00372] CRISPR-associated protein Cas4 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACTGC TATCTCCTAA GCCGCTCTGT AGCGTCGTAA ACTGTGAAGA CTTGGAGAAG 
CTCGACCACG TCAGCGCCTT GAACGAGCTG AGGAGAGAAC AGGAGATATT CAAGTTGCTT 
CCGGGGATCT ACGCACATAG GTACGACTTC AGACGTGTCT CTCCCTCAAT TATAAACGAC 
TTTGAATATT GCCCCCGCCT ACTGTGGGTT CAGCACAAGC TCGGGCTCAA GTTGCTCAGC 
GAGAAGTCGG TGGTGTCCAT AATAAGGGGT AGAATTCTGC ACGAGAGATA CGAACGGCTC 
CTCTCTCAGT ACGAGAACGT GGTTGCTGAG TACAAGGTTG AGATAGGCGA CCTCGTGGGC 
GTAGTGGACT TGGTGATTAA ACGCGGCGGC GAGTATATAC CTGTTGAGAT AAAGACTGGC 
TTCAGCAAGG AGGCTCACAA GACTCAGCTA CAGATATACA TATCTATGTT GAAGGCCCGT 
TTCGGCTACC TGGTATACAG AAACCACGTG GAGGTAGTAC ACAGGAACGA CGCCGCGCTT 
GACGTGCTTA AGAAAATACG TGAAATTCTC AGCGCCAGAG AAGCGCCGCC GGCAAAATGC 
AATAGCTGTA TATTTAAACC CATATGTAAA AATCTTCTAT AG
 
Protein sequence
MELLSPKPLC SVVNCEDLEK LDHVSALNEL RREQEIFKLL PGIYAHRYDF RRVSPSIIND 
FEYCPRLLWV QHKLGLKLLS EKSVVSIIRG RILHERYERL LSQYENVVAE YKVEIGDLVG 
VVDLVIKRGG EYIPVEIKTG FSKEAHKTQL QIYISMLKAR FGYLVYRNHV EVVHRNDAAL 
DVLKKIREIL SAREAPPAKC NSCIFKPICK NLL