Gene Pcal_0214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPcal_0214 
Symbol 
ID4909574 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum calidifontis JCM 11548 
KingdomArchaea 
Replicon accessionNC_009073 
Strand+ 
Start bp215423 
End bp216436 
Gene Length1014 bp 
Protein Length337 aa 
Translation table11 
GC content59% 
IMG OID640123966 
ProductABC transporter periplasmic-binding protein 
Protein accessionYP_001055117 
Protein GI126458839 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.308816 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAATAA GGGCCTTATT GGCAACGCTC ATAGTCGTCG CCGTGTTGAT AGTGGCCTTT 
TTGGCTCTTC AATCCCTTCA ACAGCCGCCA AAGAGGCTTG TCATCGTCGG CCCGGCTGGG 
ATCAGCGACT TGGGGAAGGC GCTTGCGAAA AAGTTCAGCG AGAAGTACGG CGTCAACGCC 
ACCTTTGTGC CCCTGGGCGG CGCGGTGGAG ATGGTGAACG AGCTTGTGCG CGCCAAGGAC 
AACCCGCCTT GGGACGTGGC CATCGGTGTG CCGGAGTTCT ACTACACCGT GCTCATCGAA 
CAGGGGGTCT TGTACTGCCC TGGGCTAAAG GTGGAGGGCG TCCCGGCAGA GGAGTTTTGG 
GACCCCCACG GCTGTGTATA CCCCCTGGAC AAGTCATACA TAGGCATTGT CTACAACGAG 
TCCGCCTTGG CCAAGCTCGG CCTACCGCCG CCGCAGACCC TCGACGACTT GTTAAAGCCT 
GAGTACAAGG GGCTTATCGC CTATCCCAAC CCCGTGCAGT CGGGGACGGG CCTCGCCGTC 
TTGTCGTGGA TTATGTCTGT CAAGGGCGAG GAGGAGGGAT GGCGCTTCTT GAAGCAGCTC 
GCCGGGCAAA TAGCCAAGGT GGGGTACCCC AGCGGCTTTA CCTCGCTAAG GAACGCCCTG 
AAGAGGGGGG ACGTGGTCAT TGCCCTCTCC TGGTACAGCC ACGCCATTGA CCCAGGCACG 
CCTCATATGA GGGCCGCCAC GTACAGTGCG TTTTTGTACA GAGAGGGGGT GGCTGTGTTG 
AAGAACGCCA AGAACCGCGA CCTCGCTGTG GAGTTTGTAA AATTTGCCTT GAGCAAGGAG 
GGGCAGGACT TGGTCGATCC CTACAACTAT ATGTTGCCAG TCCGCCCAGA CGCCGTGGTG 
GAAAACAACA AGGGGTTGCC CCAGCCTCAG ACAGTTGTGG TGTACAACCC CGCCCTGGGG 
TCTAAGGCCG ACGAGTGGAG ACTTAGATGG CAGAGAGAGA TAGCCTCCGG GTAA
 
Protein sequence
MSIRALLATL IVVAVLIVAF LALQSLQQPP KRLVIVGPAG ISDLGKALAK KFSEKYGVNA 
TFVPLGGAVE MVNELVRAKD NPPWDVAIGV PEFYYTVLIE QGVLYCPGLK VEGVPAEEFW 
DPHGCVYPLD KSYIGIVYNE SALAKLGLPP PQTLDDLLKP EYKGLIAYPN PVQSGTGLAV 
LSWIMSVKGE EEGWRFLKQL AGQIAKVGYP SGFTSLRNAL KRGDVVIALS WYSHAIDPGT 
PHMRAATYSA FLYREGVAVL KNAKNRDLAV EFVKFALSKE GQDLVDPYNY MLPVRPDAVV 
ENNKGLPQPQ TVVVYNPALG SKADEWRLRW QREIASG