| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pcal_0087 |
|---|
| Symbol | |
|---|
| ID | 4909121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum calidifontis JCM 11548 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_009073 |
|---|
| Strand | + |
|---|
| Start bp | 86308 |
|---|
| End bp | 87738 |
|---|
| Gene Length | 1431 bp |
|---|
| Protein Length | 476 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640123840 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001054993 |
|---|
| Protein GI | 126458715 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5542] Predicted integral membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0388054 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGCCAAGG CGGCGAGCAA CTTGGCCTCG AGCTCCGTCT CCTCTCTCAG AGAGGCCTTC
ACCGGCTTGA AGAGCCTAAA GGCTAGGTAC AGCACCGCCG CCACGACGGC CGCGAGCAGT
AGGACAATCC ACACGTGGCG CAAAGCCATA TATTTATATC CATTTCAAGG AGTGCTCCGC
CTCCTACCCC CAGCGGCGGT TCTCGCGGCC GGCCTCCTCA TAAGGGCATA CTTTGCCCCC
TTCACCGTGG GGAGCGACGT GGTGCAGTTC GCCGGATTTG CAGACAGCGT GCACAGACAC
GGACTCTGCT TCTACAAATA CGCGGGGGGA GAAAACGCGG AGGCAGAGGG GTGGGCGTAC
CCGTGGCCAT TCCCCTACGG CCCGCTGGCC GTTGCCCTCT TAGCCGTTGC CAGGCTCCTC
GCGCCCGGCG CAGTGGAGAA GGTGGGCGAG TGGGTGTACG CGCCCCCGGA CTGGATAGTC
GCCTCCAAGG CGTTGTTCAT AGCCTTCGAC ACCGCGGTTG CAGTCCTCAT CTACTCTAAC
GGGGCGGGGT GGCCCACTTG GCGGAGGACA GCCGCCATGG CCCTCTACTA CTTAAACCCC
GCCGTGATCT ACACCTCGGC CATATACGGC ATGTTGGACC CACTGCCAGC CGCGCTCCTC
ATCGCCGCTC TGAGGCTGAG GGGCGGCTTC TGGGCGGGGG CCCTTCTCGG CTTAGCCGCC
GCCACGAAGC TAAATGCGGC TCCGGCTGCG CTTTTCGCCG CACTCGCGTC GCCGTCGCTG
AGGCTCGCCG CGGGGTTTGC GGCAGGGGCG CTCGTCCCCG TAATGCCCTT CGAGGCGGCG
TGCCCCGGTA GCCTCTTGGC GTGGGTCCAC GCGGCGCTGT CGGTGGCGTC GCCCGGCTAC
AACCCCCCTG TGGTGTACAG CTTCAATGGG GTGACTACGC TGGCCACGTA TCTGCATGAG
AAGACCGGCG GAGACTACTT ATGGGCCATC CGTGCGTGGT GGGTCGCGGC CGCGGCGGCC
TACGCCCCCC TGCTCCTCGT AGCGAGACGG GCCGGTCCGC TGGCCTCTGC CTACTTGGCG
TACTTAGCCT ACACGGCCAC CTACTGGCGT GTCAACTACC AATACTTCCT CCTCCTGGCG
GGCCTCGCCG CGTTGCACAT AGCCGCGCCC GGCGTCAGCA GAGCAGAGAA GGCGGTTTCC
CTGGCGCACT TGGCGGCCGT CGCCCTTTGG CCCTTCCTCT ACCCCGTCAG CTGGTGGGCC
CGCGTCCATG TGAAAGAGCC CAACGAGGCG GTGGCAACGG CGCTAGACGC TGTGTCGCTA
AAGTTGTTGG ACCCCGAGGT ATACGTGGCG TACTCCCTCG CGTTAACGGC CCTGGCGTAT
GTGGCGCTTG CGGCGCACTA CCGCCGGTGG TTTAAGCGTA TAAACCCCTA A
|
|---|
| Protein sequence | MAKAASNLAS SSVSSLREAF TGLKSLKARY STAATTAASS RTIHTWRKAI YLYPFQGVLR
LLPPAAVLAA GLLIRAYFAP FTVGSDVVQF AGFADSVHRH GLCFYKYAGG ENAEAEGWAY
PWPFPYGPLA VALLAVARLL APGAVEKVGE WVYAPPDWIV ASKALFIAFD TAVAVLIYSN
GAGWPTWRRT AAMALYYLNP AVIYTSAIYG MLDPLPAALL IAALRLRGGF WAGALLGLAA
ATKLNAAPAA LFAALASPSL RLAAGFAAGA LVPVMPFEAA CPGSLLAWVH AALSVASPGY
NPPVVYSFNG VTTLATYLHE KTGGDYLWAI RAWWVAAAAA YAPLLLVARR AGPLASAYLA
YLAYTATYWR VNYQYFLLLA GLAALHIAAP GVSRAEKAVS LAHLAAVALW PFLYPVSWWA
RVHVKEPNEA VATALDAVSL KLLDPEVYVA YSLALTALAY VALAAHYRRW FKRINP
|
|---|
| |